Reading package lists... Building dependency tree... Reading state information... NOTICE: 'libhac-java' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/libhac-java Need to get 12.1 kB of source archives. Get:1 http://urika:3142/ftp.debian.org/debian/ sid/main libhac-java 0.20110510-1 (dsc) [2,117 B] Get:2 http://urika:3142/ftp.debian.org/debian/ sid/main libhac-java 0.20110510-1 (tar) [7,548 B] Get:3 http://urika:3142/ftp.debian.org/debian/ sid/main libhac-java 0.20110510-1 (diff) [2,396 B] gpgv: keyblock resource `/tmp/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Fri 11 Apr 2014 07:30:25 PM UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./libhac-java_0.20110510-1.dsc dpkg-source: info: extracting libhac-java in libhac-java-0.20110510 dpkg-source: info: unpacking libhac-java_0.20110510.orig.tar.xz dpkg-source: info: unpacking libhac-java_0.20110510-1.debian.tar.xz Fetched 12.1 kB in 0s (115 kB/s) Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Killed old client process Internet Systems Consortium DHCP Client 4.3.2 Copyright 2004-2015 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/ Listening on LPF/eth0/06:c3:40:c6:02:49 Sending on LPF/eth0/06:c3:40:c6:02:49 Sending on Socket/fallback DHCPRELEASE on eth0 to 10.0.3.1 port 67 dpkg-buildpackage: source package libhac-java dpkg-buildpackage: source version 0.20110510-1 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build libhac-java-0.20110510 dpkg-buildpackage: host architecture amd64 debian/rules clean dh clean --with javahelper dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/libhac-java-0.20110510' dh_auto_clean rm -rf .[a-z]* rm -rf *.jar make[1]: Leaving directory '/libhac-java-0.20110510' jh_clean dh_clean dpkg-source -b libhac-java-0.20110510 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libhac-java using existing ./libhac-java_0.20110510.orig.tar.xz dpkg-source: warning: ignoring deletion of file .classpath, use --include-removal to override dpkg-source: warning: ignoring deletion of file .project, use --include-removal to override dpkg-source: warning: ignoring deletion of directory .settings dpkg-source: warning: ignoring deletion of file .settings/org.eclipse.jdt.core.prefs, use --include-removal to override dpkg-source: info: building libhac-java in libhac-java_0.20110510-1.debian.tar.xz dpkg-source: info: building libhac-java in libhac-java_0.20110510-1.dsc debian/rules build dh build --with javahelper dh_testdir dh_auto_configure jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/libhac-java-0.20110510' jh_build -J hac.jar src find src -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javac -g -cp :debian/_jh_build.hac -d debian/_jh_build.hac -source 1.5 -target 1.5 warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings find src -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javadoc -locale en_US -link /usr/share/doc/default-jre-headless/api -link /usr/share/doc/default-jdk-doc/api -classpath :debian/_jh_build.hac -d debian/_jh_build.javadoc/api -quiet -notimestamp -source 1.5 src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "58" in "http://www.mathworks.com/help/toolbox/stats/linkage.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.mathworks.com/help/toolbox/stats/linkage.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.mathworks.com/help/toolbox/stats/linkage.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.mathworks.com/help/toolbox/stats/linkage.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.mathworks.com/help/toolbox/stats/linkage.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.mathworks.com/help/toolbox/stats/linkage.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.mathworks.com/help/toolbox/stats/linkage.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "58" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "126" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see:illegal character: "47" in "http://www.stanford.edu/~maureenh/quals/html/ml/node73.html" src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see: reference not found: http://www.mathworks.com/help/toolbox/stats/linkage.html src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see: reference not found: http://www.stanford.edu/~maureenh/quals/html/ml/node73.html src/ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.java:43: warning - Tag @see: reference not found: [The data analysis handbook. By Ildiko E. Frank, Roberto Todeschini. Pages 152-155] src/ch/usi/inf/sape/hac/agglomeration/CompleteLinkage.java:47: warning - Tag @see:illegal character: "58" in "http://www.stanford.edu/~maureenh/quals/html/ml/node75.html The general form of the Lance-Williams matrix-update formula: d[(i,j),k] = ai*d[i,k] + aj*d[j,k] + b*d[i,j] + g*|d[i,k]-d[j,k]| For the "single linkage" method: ai = 0.5 aj = 0.5 b = 0 g = 0.5 Thus: d[(i,j),k] = 0.5*d[i,k] + 0.5*d[j,k] + 0.5*|d[i,k]-d[j,k]| = 0.5*d[i,k] + 0.5*d[j,k] + | 0.5*d[i,k] - 0.5*d[j,k] | = d[i,j]../libhac-java_0.20110510-1_amd64.changes dpkg-genchanges: not including original source code in upload dpkg-source --after-build libhac-java-0.20110510 dpkg-buildpackage: binary and diff upload (original source NOT included)