Reading package lists... Building dependency tree... Reading state information... NOTICE: 'indigo' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debichem/unstable/indigo/ Need to get 5,489 kB of source archives. Get:1 http://urika:3142/ftp.debian.org/debian/ sid/main indigo 1.1.12-1 (dsc) [1,614 B] Get:2 http://urika:3142/ftp.debian.org/debian/ sid/main indigo 1.1.12-1 (tar) [5,468 kB] Get:3 http://urika:3142/ftp.debian.org/debian/ sid/main indigo 1.1.12-1 (diff) [20.2 kB] gpgv: keyblock resource `/tmp/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Tue 11 Feb 2014 09:50:09 PM UTC using DSA key ID 088F6B8C gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./indigo_1.1.12-1.dsc dpkg-source: info: extracting indigo in indigo-1.1.12 dpkg-source: info: unpacking indigo_1.1.12.orig.tar.gz dpkg-source: info: unpacking indigo_1.1.12-1.debian.tar.xz dpkg-source: info: applying library_dir_and_name.patch dpkg-source: info: applying tinyxml_fix_undefined_symbol.patch dpkg-source: info: applying java_wrappers.patch Fetched 5,489 kB in 0s (7,689 kB/s) Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: cmake cmake-data libcurl3 libjsoncpp0v5 libtinyxml-dev libtinyxml2.6.2v5 0 upgraded, 6 newly installed, 0 to remove and 1 not upgraded. Need to get 4,016 kB of archives. After this operation, 19.6 MB of additional disk space will be used. Get:1 http://urika:3142/ftp.debian.org/debian/ sid/main cmake-data all 3.2.2-2 [1,046 kB] Get:2 http://urika:3142/ftp.debian.org/debian/ sid/main libcurl3 amd64 7.44.0-1 [267 kB] Get:3 http://urika:3142/ftp.debian.org/debian/ sid/main libjsoncpp0v5 amd64 0.10.5-1 [75.7 kB] Get:4 http://urika:3142/ftp.debian.org/debian/ sid/main cmake amd64 3.2.2-2+b1 [2,538 kB] Get:5 http://urika:3142/ftp.debian.org/debian/ sid/main libtinyxml2.6.2v5 amd64 2.6.2-3 [36.8 kB] Get:6 http://urika:3142/ftp.debian.org/debian/ sid/main libtinyxml-dev amd64 2.6.2-3 [52.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4,016 kB in 0s (26.6 MB/s) Selecting previously unselected package cmake-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82591 files and directories currently installed.) Preparing to unpack .../cmake-data_3.2.2-2_all.deb ... Unpacking cmake-data (3.2.2-2) ... Selecting previously unselected package libcurl3:amd64. Preparing to unpack .../libcurl3_7.44.0-1_amd64.deb ... Unpacking libcurl3:amd64 (7.44.0-1) ... Selecting previously unselected package libjsoncpp0v5:amd64. Preparing to unpack .../libjsoncpp0v5_0.10.5-1_amd64.deb ... Unpacking libjsoncpp0v5:amd64 (0.10.5-1) ... Selecting previously unselected package cmake. Preparing to unpack .../cmake_3.2.2-2+b1_amd64.deb ... Unpacking cmake (3.2.2-2+b1) ... Selecting previously unselected package libtinyxml2.6.2v5:amd64. Preparing to unpack .../libtinyxml2.6.2v5_2.6.2-3_amd64.deb ... Unpacking libtinyxml2.6.2v5:amd64 (2.6.2-3) ... Selecting previously unselected package libtinyxml-dev:amd64. Preparing to unpack .../libtinyxml-dev_2.6.2-3_amd64.deb ... Unpacking libtinyxml-dev:amd64 (2.6.2-3) ... Processing triggers for man-db (2.7.2-1) ... Setting up cmake-data (3.2.2-2) ... Setting up libcurl3:amd64 (7.44.0-1) ... Setting up libjsoncpp0v5:amd64 (0.10.5-1) ... Setting up cmake (3.2.2-2+b1) ... Setting up libtinyxml2.6.2v5:amd64 (2.6.2-3) ... Setting up libtinyxml-dev:amd64 (2.6.2-3) ... Processing triggers for libc-bin (2.19-19) ... Killed old client process Internet Systems Consortium DHCP Client 4.3.2 Copyright 2004-2015 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/ Listening on LPF/eth0/4e:8b:ea:72:f7:29 Sending on LPF/eth0/4e:8b:ea:72:f7:29 Sending on Socket/fallback DHCPRELEASE on eth0 to 10.0.3.1 port 67 dpkg-buildpackage: source package indigo dpkg-buildpackage: source version 1.1.12-1 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Debichem Team dpkg-source --before-build indigo-1.1.12 dpkg-buildpackage: host architecture amd64 debian/rules clean dh clean --with autotools_dev,javahelper,python2 --parallel dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/indigo-1.1.12' find build_scripts/indigo-utils | grep -v CMakeLists | grep -v indigo-utils$ | xargs rm -rf find . -type d -name "dist" | xargs rm -rf find . -name ".dep.inc" | xargs rm -f rm -f api/src/indigo_version.h rm -f /indigo-1.1.12/*.jar dh_auto_clean make[1]: Leaving directory '/indigo-1.1.12' dh_autotools-dev_restoreconfig jh_clean dh_clean dpkg-source -b indigo-1.1.12 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building indigo using existing ./indigo_1.1.12.orig.tar.gz dpkg-source: info: building indigo in indigo_1.1.12-1.debian.tar.xz dpkg-source: info: building indigo in indigo_1.1.12-1.dsc debian/rules build dh build --with autotools_dev,javahelper,python2 --parallel dh_testdir dh_autotools-dev_updateconfig debian/rules override_dh_auto_configure make[1]: Entering directory '/indigo-1.1.12' (cd build_scripts/indigo-utils && cmake -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON \ -DUSE_SYSTEM_ZLIB=YES -DUSE_SYSTEM_PNG=YES -DUSE_SYSTEM_CAIRO=YES -DUSE_SYSTEM_PIXMAN=YES \ -DCAIRO_LIBRARY_DIRS=/usr/lib/x86_64-linux-gnu \ -DPIXMAN_LIBRARY_DIRS=/usr/lib/x86_64-linux-gnu -DPIXMAN_INCLUDE_DIRS=/usr/include/pixman-1 -DLIBPIXMAN=libpixman-1.so \ -DTINYXML_LIBRARY_DIRS=/usr/lib/x86_64-linux-gnu .) -- The C compiler identification is GNU 5.2.1 -- The CXX compiler identification is GNU 5.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- System-specific folder name: Linux -- Subsystem-specific folder name: x64 -- CMAKE_BUILD_TYPE=None -- Common output dir: /indigo-1.1.12/build_scripts/indigo-utils/dist/Linux/x64 -- **** Indigo **** -- System-specific folder name: Linux -- Subsystem-specific folder name: x64 -- CMAKE_BUILD_TYPE=None -- Common output dir: /indigo-1.1.12/build_scripts/indigo-utils/dist/Linux/x64 -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") -- Indigo version is 1.1.12 -- LINK FLAGS -- UNIX AND NOT APPLE -- SUBSYSTEM_NAME EQUALS x64 -- **** Indigo-renderer **** -- System-specific folder name: Linux -- Subsystem-specific folder name: x64 -- CMAKE_BUILD_TYPE=None -- Common output dir: /indigo-1.1.12/build_scripts/indigo-utils/dist/Linux/x64 -- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.2.50") -- **** Indigo-cano **** -- **** Indigo-deco **** -- **** Indigo-depict **** -- Configuring done CMake Warning (dev) in /indigo-1.1.12/api/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "indigo-shared" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: reaction;layout;tinyxml LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in /indigo-1.1.12/api/plugins/renderer/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "indigo-renderer-shared" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: cairo;render2d;indigo-shared LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /indigo-1.1.12/build_scripts/indigo-utils make[1]: Leaving directory '/indigo-1.1.12' jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/indigo-1.1.12' (cd build_scripts/indigo-utils && /usr/bin/make VERBOSE=1) make[2]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -H/indigo-1.1.12/build_scripts/indigo-utils -B/indigo-1.1.12/build_scripts/indigo-utils --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/common/CMakeFiles/common.dir/build.make indigo/common/CMakeFiles/common.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/common /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/common /indigo-1.1.12/build_scripts/indigo-utils/indigo/common/CMakeFiles/common.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/common/CMakeFiles/common.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/common/CMakeFiles/common.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/common/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/common/CMakeFiles/common.dir/depend.internal". Scanning dependencies of target common make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/common/CMakeFiles/common.dir/build.make indigo/common/CMakeFiles/common.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 0%] Building C object indigo/common/CMakeFiles/common.dir/base_c/bitarray.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_c/bitarray.c.o -c /indigo-1.1.12/common/base_c/bitarray.c /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 0%] Building C object indigo/common/CMakeFiles/common.dir/base_c/nano_posix.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_c/nano_posix.c.o -c /indigo-1.1.12/common/base_c/nano_posix.c /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 1 [ 1%] Building C object indigo/common/CMakeFiles/common.dir/base_c/os_dir_posix.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_c/os_dir_posix.c.o -c /indigo-1.1.12/common/base_c/os_dir_posix.c /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 1%] Building C object indigo/common/CMakeFiles/common.dir/base_c/os_sync_posix.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_c/os_sync_posix.c.o -c /indigo-1.1.12/common/base_c/os_sync_posix.c /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 1%] Building C object indigo/common/CMakeFiles/common.dir/base_c/os_thread_posix.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_c/os_thread_posix.c.o -c /indigo-1.1.12/common/base_c/os_thread_posix.c /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 2 [ 2%] Building C object indigo/common/CMakeFiles/common.dir/base_c/os_tls_posix.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_c/os_tls_posix.c.o -c /indigo-1.1.12/common/base_c/os_tls_posix.c /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 2%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/bitinworker.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/bitinworker.cpp.o -c /indigo-1.1.12/common/base_cpp/bitinworker.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 2%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/bitoutworker.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/bitoutworker.cpp.o -c /indigo-1.1.12/common/base_cpp/bitoutworker.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 3 [ 3%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/cancellation_handler.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/cancellation_handler.cpp.o -c /indigo-1.1.12/common/base_cpp/cancellation_handler.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 3%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/chunk_storage.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/chunk_storage.cpp.o -c /indigo-1.1.12/common/base_cpp/chunk_storage.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 3%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/common_exceptions_impl.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/common_exceptions_impl.cpp.o -c /indigo-1.1.12/common/base_cpp/common_exceptions_impl.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 4 [ 4%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/crc32.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/crc32.cpp.o -c /indigo-1.1.12/common/base_cpp/crc32.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 4%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/d_bitset.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/d_bitset.cpp.o -c /indigo-1.1.12/common/base_cpp/d_bitset.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 4%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/exception.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/exception.cpp.o -c /indigo-1.1.12/common/base_cpp/exception.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 5 [ 5%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/gray_codes.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/gray_codes.cpp.o -c /indigo-1.1.12/common/base_cpp/gray_codes.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 5%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/io_base.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/io_base.cpp.o -c /indigo-1.1.12/common/base_cpp/io_base.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 5%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/locale_guard.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/locale_guard.cpp.o -c /indigo-1.1.12/common/base_cpp/locale_guard.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 6 [ 6%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/os_sync_wrapper.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/os_sync_wrapper.cpp.o -c /indigo-1.1.12/common/base_cpp/os_sync_wrapper.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 6%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/os_thread_wrapper.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/os_thread_wrapper.cpp.o -c /indigo-1.1.12/common/base_cpp/os_thread_wrapper.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 6%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/output.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/output.cpp.o -c /indigo-1.1.12/common/base_cpp/output.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 7 [ 7%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/profiling.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/profiling.cpp.o -c /indigo-1.1.12/common/base_cpp/profiling.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 7%] Building CXX object 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-D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/shared_ptr.cpp.o -c /indigo-1.1.12/common/base_cpp/shared_ptr.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 8 [ 8%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/shmem_posix.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/shmem_posix.cpp.o -c /indigo-1.1.12/common/base_cpp/shmem_posix.cpp /usr/bin/cmake -E cmake_progress_report 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/indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/string_pool.cpp.o -c /indigo-1.1.12/common/base_cpp/string_pool.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 9 [ 9%] Building CXX object indigo/common/CMakeFiles/common.dir/base_cpp/tlscont.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/common && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/common.dir/base_cpp/tlscont.cpp.o -c 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CMakeFiles/common.dir/base_cpp/smart_output.cpp.o CMakeFiles/common.dir/base_cpp/string_pool.cpp.o CMakeFiles/common.dir/base_cpp/tlscont.cpp.o CMakeFiles/common.dir/lzw/lzw_decoder.cpp.o CMakeFiles/common.dir/lzw/lzw_dictionary.cpp.o CMakeFiles/common.dir/lzw/lzw_encoder.cpp.o CMakeFiles/common.dir/math/best_fit.cpp.o CMakeFiles/common.dir/math/line3f.cpp.o CMakeFiles/common.dir/math/lseg3f.cpp.o CMakeFiles/common.dir/math/matr3x3d.cpp.o CMakeFiles/common.dir/math/plane3f.cpp.o CMakeFiles/common.dir/math/transform3f.cpp.o CMakeFiles/common.dir/math/vec2f.cpp.o CMakeFiles/common.dir/math/vec3f.cpp.o /usr/bin/ranlib ../../dist/Linux/x64/lib/libcommon.a make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 [ 13%] Built target common /usr/bin/make -f indigo/graph/CMakeFiles/graph.dir/build.make indigo/graph/CMakeFiles/graph.dir/depend make[4]: 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indigo/graph/CMakeFiles/graph.dir/src/dfs_walk.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/dfs_walk.cpp.o -c /indigo-1.1.12/graph/src/dfs_walk.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 15%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/edge_rotation_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/edge_rotation_matcher.cpp.o -c /indigo-1.1.12/graph/src/edge_rotation_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 16 [ 16%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/edge_subgraph_enumerator.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/edge_subgraph_enumerator.cpp.o -c /indigo-1.1.12/graph/src/edge_subgraph_enumerator.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 16%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/embedding_enumerator.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/embedding_enumerator.cpp.o -c /indigo-1.1.12/graph/src/embedding_enumerator.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 16%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/embeddings_storage.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/embeddings_storage.cpp.o -c /indigo-1.1.12/graph/src/embeddings_storage.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 17 [ 17%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/filter.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/filter.cpp.o -c /indigo-1.1.12/graph/src/filter.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 17%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/graph.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/graph.cpp.o -c /indigo-1.1.12/graph/src/graph.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 17%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/graph_affine_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/graph_affine_matcher.cpp.o -c /indigo-1.1.12/graph/src/graph_affine_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 18 [ 18%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/graph_constrained_bmatching_finder.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g 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CMakeFiles/graph.dir/src/graph_decomposer.cpp.o -c /indigo-1.1.12/graph/src/graph_decomposer.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 19 [ 19%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/graph_fast_access.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/graph_fast_access.cpp.o -c /indigo-1.1.12/graph/src/graph_fast_access.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 19%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/graph_perfect_matching.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/graph_perfect_matching.cpp.o -c /indigo-1.1.12/graph/src/graph_perfect_matching.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 19%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/graph_subchain_enumerator.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/graph_subchain_enumerator.cpp.o -c /indigo-1.1.12/graph/src/graph_subchain_enumerator.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 20 [ 20%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/graph_subtree_enumerator.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/graph_subtree_enumerator.cpp.o -c 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&& /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/morgan_code.cpp.o -c /indigo-1.1.12/graph/src/morgan_code.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 21 [ 21%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/path_enumerator.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/path_enumerator.cpp.o -c /indigo-1.1.12/graph/src/path_enumerator.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 21%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/scaffold_detection.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/scaffold_detection.cpp.o -c /indigo-1.1.12/graph/src/scaffold_detection.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 21%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/shortest_path_finder.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/shortest_path_finder.cpp.o -c /indigo-1.1.12/graph/src/shortest_path_finder.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 22 [ 22%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/simple_cycle_basis.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/simple_cycle_basis.cpp.o -c /indigo-1.1.12/graph/src/simple_cycle_basis.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 22%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/skew_symmetric_flow_finder.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/skew_symmetric_flow_finder.cpp.o -c /indigo-1.1.12/graph/src/skew_symmetric_flow_finder.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 22%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/skew_symmetric_network.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/skew_symmetric_network.cpp.o -c /indigo-1.1.12/graph/src/skew_symmetric_network.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 23 [ 23%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/spanning_tree.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/spanning_tree.cpp.o -c /indigo-1.1.12/graph/src/spanning_tree.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 23%] Building CXX object indigo/graph/CMakeFiles/graph.dir/src/subgraph_hash.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/graph/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/graph.dir/src/subgraph_hash.cpp.o -c /indigo-1.1.12/graph/src/subgraph_hash.cpp Linking CXX static library ../../dist/Linux/x64/lib/libgraph.a cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/cmake -P CMakeFiles/graph.dir/cmake_clean_target.cmake cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/graph && /usr/bin/cmake -E cmake_link_script CMakeFiles/graph.dir/link.txt --verbose=1 /usr/bin/ar cq ../../dist/Linux/x64/lib/libgraph.a CMakeFiles/graph.dir/src/automorphism_search.cpp.o CMakeFiles/graph.dir/src/aux_path_finder.cpp.o CMakeFiles/graph.dir/src/biconnected_decomposer.cpp.o CMakeFiles/graph.dir/src/cycle_basis.cpp.o CMakeFiles/graph.dir/src/cycle_enumerator.cpp.o CMakeFiles/graph.dir/src/dfs_walk.cpp.o CMakeFiles/graph.dir/src/edge_rotation_matcher.cpp.o CMakeFiles/graph.dir/src/edge_subgraph_enumerator.cpp.o CMakeFiles/graph.dir/src/embedding_enumerator.cpp.o CMakeFiles/graph.dir/src/embeddings_storage.cpp.o CMakeFiles/graph.dir/src/filter.cpp.o CMakeFiles/graph.dir/src/graph.cpp.o CMakeFiles/graph.dir/src/graph_affine_matcher.cpp.o CMakeFiles/graph.dir/src/graph_constrained_bmatching_finder.cpp.o CMakeFiles/graph.dir/src/graph_decomposer.cpp.o CMakeFiles/graph.dir/src/graph_fast_access.cpp.o CMakeFiles/graph.dir/src/graph_perfect_matching.cpp.o CMakeFiles/graph.dir/src/graph_subchain_enumerator.cpp.o CMakeFiles/graph.dir/src/graph_subtree_enumerator.cpp.o CMakeFiles/graph.dir/src/max_common_subgraph.cpp.o CMakeFiles/graph.dir/src/morgan_code.cpp.o CMakeFiles/graph.dir/src/path_enumerator.cpp.o CMakeFiles/graph.dir/src/scaffold_detection.cpp.o CMakeFiles/graph.dir/src/shortest_path_finder.cpp.o CMakeFiles/graph.dir/src/simple_cycle_basis.cpp.o CMakeFiles/graph.dir/src/skew_symmetric_flow_finder.cpp.o CMakeFiles/graph.dir/src/skew_symmetric_network.cpp.o CMakeFiles/graph.dir/src/spanning_tree.cpp.o CMakeFiles/graph.dir/src/subgraph_hash.cpp.o /usr/bin/ranlib ../../dist/Linux/x64/lib/libgraph.a make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 14 15 16 17 18 19 20 21 22 23 [ 23%] Built target graph /usr/bin/make -f indigo/molecule/CMakeFiles/molecule.dir/build.make indigo/molecule/CMakeFiles/molecule.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/molecule /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/molecule.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/molecule.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/molecule.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/molecule.dir/depend.internal". Scanning dependencies of target molecule make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/molecule/CMakeFiles/molecule.dir/build.make indigo/molecule/CMakeFiles/molecule.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 23%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/base_molecule.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/base_molecule.cpp.o -c /indigo-1.1.12/molecule/src/base_molecule.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 23%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/canonical_smiles_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/canonical_smiles_saver.cpp.o -c /indigo-1.1.12/molecule/src/canonical_smiles_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 50 [ 24%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/cmf_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include 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CMakeFiles/molecule.dir/src/cmf_saver.cpp.o -c /indigo-1.1.12/molecule/src/cmf_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 24%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/elements.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/elements.cpp.o -c /indigo-1.1.12/molecule/src/elements.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 51 [ 25%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/gross_formula.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/gross_formula.cpp.o -c /indigo-1.1.12/molecule/src/gross_formula.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 25%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/icm_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/icm_loader.cpp.o -c /indigo-1.1.12/molecule/src/icm_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 25%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/icm_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/icm_saver.cpp.o -c /indigo-1.1.12/molecule/src/icm_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 52 [ 26%] Building CXX object 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-fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule.cpp.o -c /indigo-1.1.12/molecule/src/molecule.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 26%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_3d_constraints.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_3d_constraints.cpp.o -c /indigo-1.1.12/molecule/src/molecule_3d_constraints.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 53 [ 27%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_allene_stereo.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_allene_stereo.cpp.o -c /indigo-1.1.12/molecule/src/molecule_allene_stereo.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 27%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_arom.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_arom.cpp.o -c /indigo-1.1.12/molecule/src/molecule_arom.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 27%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_arom_match.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_arom_match.cpp.o -c /indigo-1.1.12/molecule/src/molecule_arom_match.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 54 [ 28%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_auto_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_auto_loader.cpp.o -c /indigo-1.1.12/molecule/src/molecule_auto_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 28%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_automorphism_search.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_automorphism_search.cpp.o -c /indigo-1.1.12/molecule/src/molecule_automorphism_search.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 55 [ 29%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_cdxml_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_cdxml_saver.cpp.o -c /indigo-1.1.12/molecule/src/molecule_cdxml_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 29%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_chain_fingerprints.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_chain_fingerprints.cpp.o -c /indigo-1.1.12/molecule/src/molecule_chain_fingerprints.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 29%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_cis_trans.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_cis_trans.cpp.o -c /indigo-1.1.12/molecule/src/molecule_cis_trans.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 56 [ 30%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_cml_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_cml_saver.cpp.o -c /indigo-1.1.12/molecule/src/molecule_cml_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 30%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_dearom.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_dearom.cpp.o -c /indigo-1.1.12/molecule/src/molecule_dearom.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 30%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_electrons_localizer.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_electrons_localizer.cpp.o -c /indigo-1.1.12/molecule/src/molecule_electrons_localizer.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 57 [ 31%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_exact_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_exact_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_exact_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 31%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_exact_substructure_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_exact_substructure_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_exact_substructure_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 31%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_fingerprint.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_fingerprint.cpp.o -c /indigo-1.1.12/molecule/src/molecule_fingerprint.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 58 [ 32%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_inchi.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_inchi.cpp.o -c /indigo-1.1.12/molecule/src/molecule_inchi.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 32%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_inchi_component.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_inchi_component.cpp.o -c /indigo-1.1.12/molecule/src/molecule_inchi_component.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 32%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_inchi_layers.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_inchi_layers.cpp.o -c /indigo-1.1.12/molecule/src/molecule_inchi_layers.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 59 [ 33%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_inchi_utils.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_inchi_utils.cpp.o -c /indigo-1.1.12/molecule/src/molecule_inchi_utils.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 33%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_mass.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_mass.cpp.o -c /indigo-1.1.12/molecule/src/molecule_mass.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 33%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_neighbourhood_counters.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_neighbourhood_counters.cpp.o -c /indigo-1.1.12/molecule/src/molecule_neighbourhood_counters.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 60 [ 34%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_pi_systems_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_pi_systems_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_pi_systems_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 34%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_rgroups.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_rgroups.cpp.o -c /indigo-1.1.12/molecule/src/molecule_rgroups.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 34%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_savers.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_savers.cpp.o -c /indigo-1.1.12/molecule/src/molecule_savers.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 61 [ 35%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_scaffold_detection.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_scaffold_detection.cpp.o -c /indigo-1.1.12/molecule/src/molecule_scaffold_detection.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 35%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_stereocenters.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_stereocenters.cpp.o -c /indigo-1.1.12/molecule/src/molecule_stereocenters.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 35%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_substructure_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_substructure_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_substructure_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 62 [ 36%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_tautomer_chain.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_tautomer_chain.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_chain.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 36%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_tautomer_match.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_tautomer_match.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_match.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 36%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_tautomer_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_tautomer_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 63 [ 37%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_tautomer_superstructure.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_tautomer_superstructure.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_superstructure.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 37%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_tautomer_utils.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_tautomer_utils.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_utils.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 64 [ 38%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molfile_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molfile_loader.cpp.o -c /indigo-1.1.12/molecule/src/molfile_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 38%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molfile_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molfile_saver.cpp.o -c /indigo-1.1.12/molecule/src/molfile_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 38%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/multiple_cml_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/multiple_cml_loader.cpp.o -c /indigo-1.1.12/molecule/src/multiple_cml_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 65 [ 39%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/query_molecule.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/query_molecule.cpp.o -c /indigo-1.1.12/molecule/src/query_molecule.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 39%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/rdf_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/rdf_loader.cpp.o -c /indigo-1.1.12/molecule/src/rdf_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 39%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/sdf_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/sdf_loader.cpp.o -c /indigo-1.1.12/molecule/src/sdf_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 66 [ 40%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/smiles_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/smiles_loader.cpp.o -c /indigo-1.1.12/molecule/src/smiles_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 40%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/smiles_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/smiles_saver.cpp.o -c /indigo-1.1.12/molecule/src/smiles_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 40%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/src/molecule_cml_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/src/molecule_cml_loader.cpp.o -c /indigo-1.1.12/molecule/src/molecule_cml_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 67 [ 41%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/indigo-1.1.12/common/gzip/gzip_output.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/indigo-1.1.12/common/gzip/gzip_output.cpp.o -c /indigo-1.1.12/common/gzip/gzip_output.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 41%] Building CXX object indigo/molecule/CMakeFiles/molecule.dir/indigo-1.1.12/common/gzip/gzip_scanner.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/molecule.dir/indigo-1.1.12/common/gzip/gzip_scanner.cpp.o -c /indigo-1.1.12/common/gzip/gzip_scanner.cpp Linking CXX static library ../../dist/Linux/x64/lib/libmolecule.a cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/cmake -P CMakeFiles/molecule.dir/cmake_clean_target.cmake cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecule.dir/link.txt --verbose=1 /usr/bin/ar cq ../../dist/Linux/x64/lib/libmolecule.a CMakeFiles/molecule.dir/src/base_molecule.cpp.o CMakeFiles/molecule.dir/src/canonical_smiles_saver.cpp.o CMakeFiles/molecule.dir/src/cmf_loader.cpp.o CMakeFiles/molecule.dir/src/cmf_saver.cpp.o CMakeFiles/molecule.dir/src/elements.cpp.o CMakeFiles/molecule.dir/src/gross_formula.cpp.o CMakeFiles/molecule.dir/src/icm_loader.cpp.o CMakeFiles/molecule.dir/src/icm_saver.cpp.o CMakeFiles/molecule.dir/src/max_common_submolecule.cpp.o CMakeFiles/molecule.dir/src/molecule.cpp.o CMakeFiles/molecule.dir/src/molecule_3d_constraints.cpp.o CMakeFiles/molecule.dir/src/molecule_allene_stereo.cpp.o CMakeFiles/molecule.dir/src/molecule_arom.cpp.o CMakeFiles/molecule.dir/src/molecule_arom_match.cpp.o CMakeFiles/molecule.dir/src/molecule_auto_loader.cpp.o CMakeFiles/molecule.dir/src/molecule_automorphism_search.cpp.o CMakeFiles/molecule.dir/src/molecule_cdxml_saver.cpp.o CMakeFiles/molecule.dir/src/molecule_chain_fingerprints.cpp.o CMakeFiles/molecule.dir/src/molecule_cis_trans.cpp.o CMakeFiles/molecule.dir/src/molecule_cml_saver.cpp.o CMakeFiles/molecule.dir/src/molecule_dearom.cpp.o CMakeFiles/molecule.dir/src/molecule_electrons_localizer.cpp.o CMakeFiles/molecule.dir/src/molecule_exact_matcher.cpp.o CMakeFiles/molecule.dir/src/molecule_exact_substructure_matcher.cpp.o CMakeFiles/molecule.dir/src/molecule_fingerprint.cpp.o CMakeFiles/molecule.dir/src/molecule_inchi.cpp.o CMakeFiles/molecule.dir/src/molecule_inchi_component.cpp.o CMakeFiles/molecule.dir/src/molecule_inchi_layers.cpp.o CMakeFiles/molecule.dir/src/molecule_inchi_utils.cpp.o CMakeFiles/molecule.dir/src/molecule_mass.cpp.o CMakeFiles/molecule.dir/src/molecule_neighbourhood_counters.cpp.o CMakeFiles/molecule.dir/src/molecule_pi_systems_matcher.cpp.o CMakeFiles/molecule.dir/src/molecule_rgroups.cpp.o CMakeFiles/molecule.dir/src/molecule_savers.cpp.o CMakeFiles/molecule.dir/src/molecule_scaffold_detection.cpp.o CMakeFiles/molecule.dir/src/molecule_stereocenters.cpp.o CMakeFiles/molecule.dir/src/molecule_substructure_matcher.cpp.o CMakeFiles/molecule.dir/src/molecule_tautomer_chain.cpp.o CMakeFiles/molecule.dir/src/molecule_tautomer_match.cpp.o CMakeFiles/molecule.dir/src/molecule_tautomer_matcher.cpp.o CMakeFiles/molecule.dir/src/molecule_tautomer_superstructure.cpp.o CMakeFiles/molecule.dir/src/molecule_tautomer_utils.cpp.o CMakeFiles/molecule.dir/src/molfile_loader.cpp.o CMakeFiles/molecule.dir/src/molfile_saver.cpp.o CMakeFiles/molecule.dir/src/multiple_cml_loader.cpp.o CMakeFiles/molecule.dir/src/query_molecule.cpp.o CMakeFiles/molecule.dir/src/rdf_loader.cpp.o CMakeFiles/molecule.dir/src/sdf_loader.cpp.o CMakeFiles/molecule.dir/src/smiles_loader.cpp.o CMakeFiles/molecule.dir/src/smiles_saver.cpp.o CMakeFiles/molecule.dir/src/molecule_cml_loader.cpp.o CMakeFiles/molecule.dir/indigo-1.1.12/common/gzip/gzip_output.cpp.o CMakeFiles/molecule.dir/indigo-1.1.12/common/gzip/gzip_scanner.cpp.o /usr/bin/ranlib ../../dist/Linux/x64/lib/libmolecule.a make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 [ 41%] Built target molecule /usr/bin/make -f indigo/molecule/CMakeFiles/moleculeObj.dir/build.make indigo/molecule/CMakeFiles/moleculeObj.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/molecule /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/moleculeObj.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/moleculeObj.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/moleculeObj.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule/CMakeFiles/moleculeObj.dir/depend.internal". Scanning dependencies of target moleculeObj make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/molecule/CMakeFiles/moleculeObj.dir/build.make indigo/molecule/CMakeFiles/moleculeObj.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 41%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/base_molecule.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/base_molecule.cpp.o -c /indigo-1.1.12/molecule/src/base_molecule.cpp 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/indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/gross_formula.cpp.o -c /indigo-1.1.12/molecule/src/gross_formula.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 43%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/icm_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/icm_loader.cpp.o -c /indigo-1.1.12/molecule/src/icm_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 70 [ 44%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/icm_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/icm_saver.cpp.o -c /indigo-1.1.12/molecule/src/icm_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 44%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/max_common_submolecule.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/max_common_submolecule.cpp.o -c /indigo-1.1.12/molecule/src/max_common_submolecule.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 44%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule.cpp.o -c /indigo-1.1.12/molecule/src/molecule.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 71 [ 45%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_3d_constraints.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_3d_constraints.cpp.o -c /indigo-1.1.12/molecule/src/molecule_3d_constraints.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 45%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_allene_stereo.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_allene_stereo.cpp.o -c /indigo-1.1.12/molecule/src/molecule_allene_stereo.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 45%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_arom.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_arom.cpp.o -c /indigo-1.1.12/molecule/src/molecule_arom.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 72 [ 46%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_arom_match.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_arom_match.cpp.o -c /indigo-1.1.12/molecule/src/molecule_arom_match.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 46%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_auto_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_auto_loader.cpp.o -c /indigo-1.1.12/molecule/src/molecule_auto_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 73 [ 47%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_automorphism_search.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_automorphism_search.cpp.o -c /indigo-1.1.12/molecule/src/molecule_automorphism_search.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 47%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_cdxml_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_cdxml_saver.cpp.o -c /indigo-1.1.12/molecule/src/molecule_cdxml_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 47%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_chain_fingerprints.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_chain_fingerprints.cpp.o -c /indigo-1.1.12/molecule/src/molecule_chain_fingerprints.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 74 [ 48%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_cis_trans.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_cis_trans.cpp.o -c /indigo-1.1.12/molecule/src/molecule_cis_trans.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 48%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_cml_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_cml_saver.cpp.o -c /indigo-1.1.12/molecule/src/molecule_cml_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 48%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_dearom.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h 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/indigo-1.1.12/molecule/src/molecule_electrons_localizer.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 49%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_exact_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_exact_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_exact_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 49%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_exact_substructure_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_exact_substructure_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_exact_substructure_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 76 [ 50%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_fingerprint.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_fingerprint.cpp.o -c /indigo-1.1.12/molecule/src/molecule_fingerprint.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 50%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_inchi.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_inchi.cpp.o -c /indigo-1.1.12/molecule/src/molecule_inchi.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 50%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_inchi_component.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_inchi_component.cpp.o -c /indigo-1.1.12/molecule/src/molecule_inchi_component.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 77 [ 51%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_inchi_layers.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_inchi_layers.cpp.o -c /indigo-1.1.12/molecule/src/molecule_inchi_layers.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 51%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_inchi_utils.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_inchi_utils.cpp.o -c /indigo-1.1.12/molecule/src/molecule_inchi_utils.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 51%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_mass.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_mass.cpp.o -c /indigo-1.1.12/molecule/src/molecule_mass.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 78 [ 52%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_neighbourhood_counters.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_neighbourhood_counters.cpp.o -c /indigo-1.1.12/molecule/src/molecule_neighbourhood_counters.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 52%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_pi_systems_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_pi_systems_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_pi_systems_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 52%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_rgroups.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_rgroups.cpp.o -c /indigo-1.1.12/molecule/src/molecule_rgroups.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 79 [ 53%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_savers.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_savers.cpp.o -c /indigo-1.1.12/molecule/src/molecule_savers.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 53%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_scaffold_detection.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_scaffold_detection.cpp.o -c /indigo-1.1.12/molecule/src/molecule_scaffold_detection.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 53%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_stereocenters.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_stereocenters.cpp.o -c /indigo-1.1.12/molecule/src/molecule_stereocenters.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 80 [ 54%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_substructure_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_substructure_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_substructure_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 54%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_chain.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_tautomer_chain.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_chain.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 54%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_match.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_tautomer_match.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_match.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 81 [ 55%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_tautomer_matcher.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 55%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_superstructure.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_tautomer_superstructure.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_superstructure.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 82 [ 56%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_utils.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_tautomer_utils.cpp.o -c /indigo-1.1.12/molecule/src/molecule_tautomer_utils.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 56%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molfile_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molfile_loader.cpp.o -c /indigo-1.1.12/molecule/src/molfile_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 56%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molfile_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molfile_saver.cpp.o -c /indigo-1.1.12/molecule/src/molfile_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 83 [ 57%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/multiple_cml_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/multiple_cml_loader.cpp.o -c /indigo-1.1.12/molecule/src/multiple_cml_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 57%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/query_molecule.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/query_molecule.cpp.o -c /indigo-1.1.12/molecule/src/query_molecule.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 57%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/rdf_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/rdf_loader.cpp.o -c /indigo-1.1.12/molecule/src/rdf_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 84 [ 58%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/sdf_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/sdf_loader.cpp.o -c /indigo-1.1.12/molecule/src/sdf_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 58%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/smiles_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/smiles_loader.cpp.o -c /indigo-1.1.12/molecule/src/smiles_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 58%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/smiles_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/smiles_saver.cpp.o -c /indigo-1.1.12/molecule/src/smiles_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 85 [ 59%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/src/molecule_cml_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/src/molecule_cml_loader.cpp.o -c /indigo-1.1.12/molecule/src/molecule_cml_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 59%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/indigo-1.1.12/common/gzip/gzip_output.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/indigo-1.1.12/common/gzip/gzip_output.cpp.o -c /indigo-1.1.12/common/gzip/gzip_output.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 59%] Building CXX object indigo/molecule/CMakeFiles/moleculeObj.dir/indigo-1.1.12/common/gzip/gzip_scanner.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/molecule && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/moleculeObj.dir/indigo-1.1.12/common/gzip/gzip_scanner.cpp.o -c /indigo-1.1.12/common/gzip/gzip_scanner.cpp make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 [ 59%] Built target moleculeObj /usr/bin/make -f indigo/reaction/CMakeFiles/reaction.dir/build.make indigo/reaction/CMakeFiles/reaction.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/reaction /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction/CMakeFiles/reaction.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction/CMakeFiles/reaction.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction/CMakeFiles/reaction.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction/CMakeFiles/reaction.dir/depend.internal". Scanning dependencies of target reaction make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/reaction/CMakeFiles/reaction.dir/build.make indigo/reaction/CMakeFiles/reaction.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 86 [ 60%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/base_reaction.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/base_reaction.cpp.o -c /indigo-1.1.12/reaction/src/base_reaction.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 60%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/base_reaction_substructure_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/base_reaction_substructure_matcher.cpp.o -c /indigo-1.1.12/reaction/src/base_reaction_substructure_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 60%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/crf_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/crf_loader.cpp.o -c /indigo-1.1.12/reaction/src/crf_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 87 [ 61%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/crf_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/crf_saver.cpp.o -c /indigo-1.1.12/reaction/src/crf_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 61%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/icr_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/icr_loader.cpp.o -c /indigo-1.1.12/reaction/src/icr_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 61%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/icr_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/icr_saver.cpp.o -c /indigo-1.1.12/reaction/src/icr_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 88 [ 62%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/query_reaction.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/query_reaction.cpp.o -c /indigo-1.1.12/reaction/src/query_reaction.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 62%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction.cpp.o -c /indigo-1.1.12/reaction/src/reaction.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 62%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_auto_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_auto_loader.cpp.o -c /indigo-1.1.12/reaction/src/reaction_auto_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 89 [ 63%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_automapper.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_automapper.cpp.o -c /indigo-1.1.12/reaction/src/reaction_automapper.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 63%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_cml_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_cml_saver.cpp.o -c /indigo-1.1.12/reaction/src/reaction_cml_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 63%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_enumerator_state.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_enumerator_state.cpp.o -c /indigo-1.1.12/reaction/src/reaction_enumerator_state.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 90 [ 64%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_exact_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_exact_matcher.cpp.o -c /indigo-1.1.12/reaction/src/reaction_exact_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 64%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_fingerprint.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_fingerprint.cpp.o -c /indigo-1.1.12/reaction/src/reaction_fingerprint.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 91 [ 65%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_neighborhood_counters.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_neighborhood_counters.cpp.o -c /indigo-1.1.12/reaction/src/reaction_neighborhood_counters.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 65%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_product_enumerator.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_product_enumerator.cpp.o -c /indigo-1.1.12/reaction/src/reaction_product_enumerator.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 65%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_substructure_matcher.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_substructure_matcher.cpp.o -c /indigo-1.1.12/reaction/src/reaction_substructure_matcher.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 92 [ 66%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_transformation.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_transformation.cpp.o -c /indigo-1.1.12/reaction/src/reaction_transformation.cpp /indigo-1.1.12/reaction/src/reaction_transformation.cpp: In member function ‘void indigo::ReactionTransformation::_mergeReactionComponents(indigo::QueryReaction&, int, indigo::QueryMolecule&, indigo::Array&)’: /indigo-1.1.12/reaction/src/reaction_transformation.cpp:147:63: warning: passing NULL to non-pointer argument 3 of ‘void indigo::BaseMolecule::mergeWithMolecule(indigo::BaseMolecule&, indigo::Array*, int)’ [-Wconversion-null] merged_molecule.mergeWithMolecule(molecule_i, NULL, NULL); ^ /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 66%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/rsmiles_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/rsmiles_loader.cpp.o -c /indigo-1.1.12/reaction/src/rsmiles_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 66%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/rsmiles_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/rsmiles_saver.cpp.o -c /indigo-1.1.12/reaction/src/rsmiles_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 93 [ 67%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/rxnfile_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/rxnfile_loader.cpp.o -c /indigo-1.1.12/reaction/src/rxnfile_loader.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 67%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/rxnfile_saver.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/rxnfile_saver.cpp.o -c /indigo-1.1.12/reaction/src/rxnfile_saver.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 67%] Building CXX object indigo/reaction/CMakeFiles/reaction.dir/src/reaction_cml_loader.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/reaction.dir/src/reaction_cml_loader.cpp.o -c /indigo-1.1.12/reaction/src/reaction_cml_loader.cpp Linking CXX static library ../../dist/Linux/x64/lib/libreaction.a cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/cmake -P CMakeFiles/reaction.dir/cmake_clean_target.cmake cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/reaction && /usr/bin/cmake -E cmake_link_script CMakeFiles/reaction.dir/link.txt --verbose=1 /usr/bin/ar cq ../../dist/Linux/x64/lib/libreaction.a CMakeFiles/reaction.dir/src/base_reaction.cpp.o CMakeFiles/reaction.dir/src/base_reaction_substructure_matcher.cpp.o CMakeFiles/reaction.dir/src/crf_loader.cpp.o CMakeFiles/reaction.dir/src/crf_saver.cpp.o CMakeFiles/reaction.dir/src/icr_loader.cpp.o CMakeFiles/reaction.dir/src/icr_saver.cpp.o CMakeFiles/reaction.dir/src/query_reaction.cpp.o CMakeFiles/reaction.dir/src/reaction.cpp.o CMakeFiles/reaction.dir/src/reaction_auto_loader.cpp.o CMakeFiles/reaction.dir/src/reaction_automapper.cpp.o CMakeFiles/reaction.dir/src/reaction_cml_saver.cpp.o CMakeFiles/reaction.dir/src/reaction_enumerator_state.cpp.o CMakeFiles/reaction.dir/src/reaction_exact_matcher.cpp.o CMakeFiles/reaction.dir/src/reaction_fingerprint.cpp.o CMakeFiles/reaction.dir/src/reaction_neighborhood_counters.cpp.o CMakeFiles/reaction.dir/src/reaction_product_enumerator.cpp.o CMakeFiles/reaction.dir/src/reaction_substructure_matcher.cpp.o CMakeFiles/reaction.dir/src/reaction_transformation.cpp.o CMakeFiles/reaction.dir/src/rsmiles_loader.cpp.o CMakeFiles/reaction.dir/src/rsmiles_saver.cpp.o CMakeFiles/reaction.dir/src/rxnfile_loader.cpp.o CMakeFiles/reaction.dir/src/rxnfile_saver.cpp.o CMakeFiles/reaction.dir/src/reaction_cml_loader.cpp.o /usr/bin/ranlib ../../dist/Linux/x64/lib/libreaction.a make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 86 87 88 89 90 91 92 93 [ 67%] Built target reaction /usr/bin/make -f indigo/layout/CMakeFiles/layout.dir/build.make indigo/layout/CMakeFiles/layout.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/layout /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout/CMakeFiles/layout.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/layout/CMakeFiles/layout.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/layout/CMakeFiles/layout.dir/depend.internal". 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Scanning dependencies of target layout make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/layout/CMakeFiles/layout.dir/build.make indigo/layout/CMakeFiles/layout.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 67%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/attachment_layout.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/attachment_layout.cpp.o -c /indigo-1.1.12/layout/src/attachment_layout.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 45 [ 68%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/layout_pattern.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/layout_pattern.cpp.o -c /indigo-1.1.12/layout/src/layout_pattern.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 68%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/metalayout.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include 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-fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/molecule_layout.cpp.o -c /indigo-1.1.12/layout/src/molecule_layout.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 69%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/molecule_layout_graph.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/molecule_layout_graph.cpp.o -c /indigo-1.1.12/layout/src/molecule_layout_graph.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 69%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/molecule_layout_graph_assign.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/molecule_layout_graph_assign.cpp.o -c /indigo-1.1.12/layout/src/molecule_layout_graph_assign.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 47 [ 70%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/molecule_layout_graph_attach.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/molecule_layout_graph_attach.cpp.o -c /indigo-1.1.12/layout/src/molecule_layout_graph_attach.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 70%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/molecule_layout_graph_border.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/molecule_layout_graph_border.cpp.o -c /indigo-1.1.12/layout/src/molecule_layout_graph_border.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 70%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/molecule_layout_graph_cycle.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/molecule_layout_graph_cycle.cpp.o -c /indigo-1.1.12/layout/src/molecule_layout_graph_cycle.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 48 [ 71%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/molecule_layout_graph_geom.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/molecule_layout_graph_geom.cpp.o -c /indigo-1.1.12/layout/src/molecule_layout_graph_geom.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 71%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/molecule_layout_graph_refine.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/molecule_layout_graph_refine.cpp.o -c /indigo-1.1.12/layout/src/molecule_layout_graph_refine.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 71%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/reaction_layout.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/reaction_layout.cpp.o -c /indigo-1.1.12/layout/src/reaction_layout.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 49 [ 72%] Building CXX object indigo/layout/CMakeFiles/layout.dir/src/refinement_state.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/layout.dir/src/refinement_state.cpp.o -c /indigo-1.1.12/layout/src/refinement_state.cpp Linking CXX static library ../../dist/Linux/x64/lib/liblayout.a cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/layout && /usr/bin/cmake -P 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make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 45 46 47 48 49 [ 72%] Built target layout /usr/bin/make -f indigo/api/CMakeFiles/dlopen-test.dir/build.make indigo/api/CMakeFiles/dlopen-test.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/api /indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/dlopen-test.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/dlopen-test.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/dlopen-test.dir/depend.internal". 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Scanning dependencies of target dlopen-test make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/api/CMakeFiles/dlopen-test.dir/build.make indigo/api/CMakeFiles/dlopen-test.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 72%] Building C object indigo/api/CMakeFiles/dlopen-test.dir/tests/c/dlopen-test.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -o CMakeFiles/dlopen-test.dir/tests/c/dlopen-test.c.o -c /indigo-1.1.12/api/tests/c/dlopen-test.c Linking C executable ../../dist/Linux/x64/shared/dlopen-test cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlopen-test.dir/link.txt --verbose=1 /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -Wl,-z,relro -rdynamic -ldl -pthread -Wl,--wrap=memcpy CMakeFiles/dlopen-test.dir/tests/c/dlopen-test.c.o -o ../../dist/Linux/x64/shared/dlopen-test -rdynamic -rdynamic -ldl -pthread make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 72%] Built target dlopen-test /usr/bin/make -f indigo/api/CMakeFiles/indigo.dir/build.make indigo/api/CMakeFiles/indigo.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/api /indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo.dir/depend.internal". 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Scanning dependencies of target indigo make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/api/CMakeFiles/indigo.dir/build.make indigo/api/CMakeFiles/indigo.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 72%] Building CXX object indigo/api/CMakeFiles/indigo.dir/src/indigo.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -DEXPORT_SYMBOL= -o CMakeFiles/indigo.dir/src/indigo.cpp.o -c /indigo-1.1.12/api/src/indigo.cpp /usr/bin/cmake -E 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/indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -DEXPORT_SYMBOL= -o CMakeFiles/indigo.dir/src/option_manager.cpp.o -c /indigo-1.1.12/api/src/option_manager.cpp Linking CXX static library ../../dist/Linux/x64/lib/libindigo-static.a cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cmake -P CMakeFiles/indigo.dir/cmake_clean_target.cmake cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo.dir/link.txt --verbose=1 /usr/bin/ar cq ../../dist/Linux/x64/lib/libindigo-static.a CMakeFiles/indigo.dir/src/indigo.cpp.o 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CMakeFiles/indigo.dir/src/indigo_scaffold.cpp.o CMakeFiles/indigo.dir/src/indigo_stereo.cpp.o CMakeFiles/indigo.dir/src/option_manager.cpp.o /usr/bin/ranlib ../../dist/Linux/x64/lib/libindigo-static.a make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 24 25 26 27 28 29 30 31 [ 80%] Built target indigo /usr/bin/make -f indigo/api/CMakeFiles/indigo-shared.dir/build.make indigo/api/CMakeFiles/indigo-shared.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/api /indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-shared.dir/DependInfo.cmake --color= Dependee 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-fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_match.cpp.o -c /indigo-1.1.12/api/src/indigo_match.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 85%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_misc.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_misc.cpp.o -c /indigo-1.1.12/api/src/indigo_misc.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 41 [ 86%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_molecule.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_molecule.cpp.o -c /indigo-1.1.12/api/src/indigo_molecule.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 86%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_object.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_object.cpp.o -c /indigo-1.1.12/api/src/indigo_object.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 86%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_options.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_options.cpp.o -c /indigo-1.1.12/api/src/indigo_options.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 42 [ 87%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_product_enumerator.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_product_enumerator.cpp.o -c /indigo-1.1.12/api/src/indigo_product_enumerator.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 87%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_properties.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_properties.cpp.o -c /indigo-1.1.12/api/src/indigo_properties.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 87%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_reaction.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_reaction.cpp.o -c /indigo-1.1.12/api/src/indigo_reaction.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 43 [ 88%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_savers.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_savers.cpp.o -c /indigo-1.1.12/api/src/indigo_savers.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 88%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_scaffold.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_scaffold.cpp.o -c /indigo-1.1.12/api/src/indigo_scaffold.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 88%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/indigo_stereo.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/indigo_stereo.cpp.o -c /indigo-1.1.12/api/src/indigo_stereo.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 44 [ 89%] Building CXX object indigo/api/CMakeFiles/indigo-shared.dir/src/option_manager.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/c++ -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/src/option_manager.cpp.o -c /indigo-1.1.12/api/src/option_manager.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 89%] Building C object indigo/api/CMakeFiles/indigo-shared.dir/indigo-1.1.12/common/hacks/memcpy.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cc -Dindigo_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-shared.dir/indigo-1.1.12/common/hacks/memcpy.c.o -c /indigo-1.1.12/common/hacks/memcpy.c Linking CXX shared library ../../dist/Linux/x64/lib/libindigo.so cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -Wl,--wrap=memcpy -Wl,-z,relro -shared -Wl,-soname,libindigo.so.0d -o ../../dist/Linux/x64/lib/libindigo.so.0d CMakeFiles/indigo-shared.dir/src/indigo.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_abbreviations_core.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_abbreviations_expand.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_array.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_basic.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_deconvolution.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_fingerprints.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_io.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_layout.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_loaders.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_macros.c.o CMakeFiles/indigo-shared.dir/src/indigo_mapping.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_match.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_misc.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_molecule.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_object.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_options.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_product_enumerator.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_properties.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_reaction.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_savers.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_scaffold.cpp.o CMakeFiles/indigo-shared.dir/src/indigo_stereo.cpp.o CMakeFiles/indigo-shared.dir/src/option_manager.cpp.o CMakeFiles/indigo-shared.dir/indigo-1.1.12/common/hacks/memcpy.c.o ../molecule/CMakeFiles/moleculeObj.dir/src/base_molecule.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/canonical_smiles_saver.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/cmf_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/cmf_saver.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/elements.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/gross_formula.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/icm_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/icm_saver.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/max_common_submolecule.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_3d_constraints.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_allene_stereo.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_arom.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_arom_match.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_auto_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_automorphism_search.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_cdxml_saver.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_chain_fingerprints.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_cis_trans.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_cml_saver.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_dearom.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_electrons_localizer.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_exact_matcher.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_exact_substructure_matcher.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_fingerprint.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_inchi.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_inchi_component.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_inchi_layers.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_inchi_utils.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_mass.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_neighbourhood_counters.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_pi_systems_matcher.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_rgroups.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_savers.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_scaffold_detection.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_stereocenters.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_substructure_matcher.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_chain.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_match.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_matcher.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_superstructure.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_tautomer_utils.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molfile_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molfile_saver.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/multiple_cml_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/query_molecule.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/rdf_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/sdf_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/smiles_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/smiles_saver.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/src/molecule_cml_loader.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/indigo-1.1.12/common/gzip/gzip_output.cpp.o ../molecule/CMakeFiles/moleculeObj.dir/indigo-1.1.12/common/gzip/gzip_scanner.cpp.o ../../dist/Linux/x64/lib/libreaction.a ../../dist/Linux/x64/lib/liblayout.a -ltinyxml ../../dist/Linux/x64/lib/libmolecule.a ../../dist/Linux/x64/lib/libgraph.a ../../dist/Linux/x64/lib/libcommon.a -lpthread -lz -ltinyxml cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cmake -E cmake_symlink_library ../../dist/Linux/x64/lib/libindigo.so.0d ../../dist/Linux/x64/lib/libindigo.so.0d ../../dist/Linux/x64/lib/libindigo.so make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 36 37 38 39 40 41 42 43 44 [ 89%] Built target indigo-shared /usr/bin/make -f indigo/api/CMakeFiles/indigo-c-test-shared.dir/build.make indigo/api/CMakeFiles/indigo-c-test-shared.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/api /indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-c-test-shared.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-c-test-shared.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-c-test-shared.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-c-test-shared.dir/depend.internal". Scanning dependencies of target indigo-c-test-shared make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/api/CMakeFiles/indigo-c-test-shared.dir/build.make indigo/api/CMakeFiles/indigo-c-test-shared.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 32 [ 90%] Building C object indigo/api/CMakeFiles/indigo-c-test-shared.dir/tests/c/indigo-test.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -o CMakeFiles/indigo-c-test-shared.dir/tests/c/indigo-test.c.o -c /indigo-1.1.12/api/tests/c/indigo-test.c Linking C executable ../../dist/Linux/x64/shared/indigo-c-test-shared cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-c-test-shared.dir/link.txt --verbose=1 /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -Wl,-z,relro CMakeFiles/indigo-c-test-shared.dir/tests/c/indigo-test.c.o -o ../../dist/Linux/x64/shared/indigo-c-test-shared -rdynamic ../../dist/Linux/x64/lib/libindigo.so.0d -lpthread make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 32 [ 90%] Built target indigo-c-test-shared /usr/bin/make -f indigo/api/CMakeFiles/indigo-c-test-static.dir/build.make indigo/api/CMakeFiles/indigo-c-test-static.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo/api /indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-c-test-static.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-c-test-static.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-c-test-static.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo/api/CMakeFiles/indigo-c-test-static.dir/depend.internal". Scanning dependencies of target indigo-c-test-static make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo/api/CMakeFiles/indigo-c-test-static.dir/build.make indigo/api/CMakeFiles/indigo-c-test-static.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 90%] Building C object indigo/api/CMakeFiles/indigo-c-test-static.dir/tests/c/indigo-test.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -o CMakeFiles/indigo-c-test-static.dir/tests/c/indigo-test.c.o -c /indigo-1.1.12/api/tests/c/indigo-test.c /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 90%] Building C object indigo/api/CMakeFiles/indigo-c-test-static.dir/indigo-1.1.12/common/hacks/memcpy.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -o CMakeFiles/indigo-c-test-static.dir/indigo-1.1.12/common/hacks/memcpy.c.o -c /indigo-1.1.12/common/hacks/memcpy.c Linking CXX executable ../../dist/Linux/x64/shared/indigo-c-test-static cd /indigo-1.1.12/build_scripts/indigo-utils/indigo/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-c-test-static.dir/link.txt --verbose=1 /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -Wl,-z,relro -Wl,--wrap=memcpy CMakeFiles/indigo-c-test-static.dir/tests/c/indigo-test.c.o CMakeFiles/indigo-c-test-static.dir/indigo-1.1.12/common/hacks/memcpy.c.o -o ../../dist/Linux/x64/shared/indigo-c-test-static -rdynamic ../../dist/Linux/x64/lib/libindigo-static.a -lpthread ../../dist/Linux/x64/lib/libreaction.a ../../dist/Linux/x64/lib/liblayout.a ../../dist/Linux/x64/lib/libmolecule.a ../../dist/Linux/x64/lib/libgraph.a ../../dist/Linux/x64/lib/libcommon.a -lpthread -lz -ltinyxml make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 90%] Built target indigo-c-test-static /usr/bin/make -f indigo-renderer/render2d/CMakeFiles/render2d.dir/build.make indigo-renderer/render2d/CMakeFiles/render2d.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/render2d /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d/CMakeFiles/render2d.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d/CMakeFiles/render2d.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d/CMakeFiles/render2d.dir/depend.internal". 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Scanning dependencies of target render2d make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo-renderer/render2d/CMakeFiles/render2d.dir/build.make indigo-renderer/render2d/CMakeFiles/render2d.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 94 [ 91%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render.cpp.o -c /indigo-1.1.12/render2d/src/render.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 91%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_cdxml.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_cdxml.cpp.o -c /indigo-1.1.12/render2d/src/render_cdxml.cpp /usr/bin/cmake -E cmake_progress_report 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/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_context.cpp.o -c /indigo-1.1.12/render2d/src/render_context.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 92%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_fonts.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_fonts.cpp.o -c /indigo-1.1.12/render2d/src/render_fonts.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 92%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_grid.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_grid.cpp.o -c /indigo-1.1.12/render2d/src/render_grid.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 96 [ 93%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_internal.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o 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-I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_item_factory.cpp.o -c /indigo-1.1.12/render2d/src/render_item_factory.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 98 [ 95%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_item_fragment.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_item_fragment.cpp.o -c /indigo-1.1.12/render2d/src/render_item_fragment.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 95%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_item_hline.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_item_hline.cpp.o -c /indigo-1.1.12/render2d/src/render_item_hline.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 95%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_item_molecule.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_item_molecule.cpp.o -c /indigo-1.1.12/render2d/src/render_item_molecule.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 99 [ 96%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_item_reaction.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_item_reaction.cpp.o -c /indigo-1.1.12/render2d/src/render_item_reaction.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 96%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_params.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_params.cpp.o -c /indigo-1.1.12/render2d/src/render_params.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 100 [ 97%] Building CXX object indigo-renderer/render2d/CMakeFiles/render2d.dir/src/render_single.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/render2d/. -I/indigo-1.1.12/render2d/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/molecule/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/render2d.dir/src/render_single.cpp.o -c /indigo-1.1.12/render2d/src/render_single.cpp Linking CXX static library ../../dist/Linux/x64/lib/librender2d.a cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/cmake -P CMakeFiles/render2d.dir/cmake_clean_target.cmake cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/render2d && /usr/bin/cmake -E cmake_link_script CMakeFiles/render2d.dir/link.txt --verbose=1 /usr/bin/ar cq ../../dist/Linux/x64/lib/librender2d.a CMakeFiles/render2d.dir/src/render.cpp.o CMakeFiles/render2d.dir/src/render_cdxml.cpp.o CMakeFiles/render2d.dir/src/render_common.cpp.o CMakeFiles/render2d.dir/src/render_context.cpp.o CMakeFiles/render2d.dir/src/render_fonts.cpp.o CMakeFiles/render2d.dir/src/render_grid.cpp.o CMakeFiles/render2d.dir/src/render_internal.cpp.o CMakeFiles/render2d.dir/src/render_item.cpp.o CMakeFiles/render2d.dir/src/render_item_aux.cpp.o CMakeFiles/render2d.dir/src/render_item_column.cpp.o CMakeFiles/render2d.dir/src/render_item_container.cpp.o CMakeFiles/render2d.dir/src/render_item_factory.cpp.o CMakeFiles/render2d.dir/src/render_item_fragment.cpp.o CMakeFiles/render2d.dir/src/render_item_hline.cpp.o CMakeFiles/render2d.dir/src/render_item_molecule.cpp.o CMakeFiles/render2d.dir/src/render_item_reaction.cpp.o CMakeFiles/render2d.dir/src/render_params.cpp.o CMakeFiles/render2d.dir/src/render_single.cpp.o /usr/bin/ranlib ../../dist/Linux/x64/lib/librender2d.a make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 94 95 96 97 98 99 100 [ 97%] Built target render2d /usr/bin/make -f indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/build.make indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api/plugins/renderer /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/depend.internal". Scanning dependencies of target indigo-renderer make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/build.make indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 34 [ 98%] Building CXX object indigo-renderer/renderer/CMakeFiles/indigo-renderer.dir/src/indigo_render2d.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api/plugins/renderer -I/indigo-1.1.12/api -I/indigo-1.1.12/api/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -DEXPORT_SYMBOL= -o CMakeFiles/indigo-renderer.dir/src/indigo_render2d.cpp.o -c /indigo-1.1.12/api/plugins/renderer/src/indigo_render2d.cpp Linking CXX static library ../../dist/Linux/x64/lib/libindigo-renderer-static.a cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cmake -P CMakeFiles/indigo-renderer.dir/cmake_clean_target.cmake cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-renderer.dir/link.txt --verbose=1 /usr/bin/ar cq ../../dist/Linux/x64/lib/libindigo-renderer-static.a CMakeFiles/indigo-renderer.dir/src/indigo_render2d.cpp.o /usr/bin/ranlib ../../dist/Linux/x64/lib/libindigo-renderer-static.a make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 34 [ 98%] Built target indigo-renderer /usr/bin/make -f indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/build.make indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api/plugins/renderer /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/depend.internal". Scanning dependencies of target indigo-renderer-shared make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/build.make indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 98%] Building CXX object indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/src/indigo_render2d.cpp.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/c++ -Dindigo_renderer_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api/plugins/renderer -I/indigo-1.1.12/api -I/indigo-1.1.12/api/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-renderer-shared.dir/src/indigo_render2d.cpp.o -c /indigo-1.1.12/api/plugins/renderer/src/indigo_render2d.cpp /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 98%] Building C object indigo-renderer/renderer/CMakeFiles/indigo-renderer-shared.dir/indigo-1.1.12/common/hacks/memcpy.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cc -Dindigo_renderer_shared_EXPORTS -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -fPIC -I/indigo-1.1.12/api/plugins/renderer -I/indigo-1.1.12/api -I/indigo-1.1.12/api/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -fvisibility=hidden -fPIC -fvisibility=hidden -fPIC -o CMakeFiles/indigo-renderer-shared.dir/indigo-1.1.12/common/hacks/memcpy.c.o -c /indigo-1.1.12/common/hacks/memcpy.c Linking CXX shared library ../../dist/Linux/x64/lib/libindigo-renderer.so cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-renderer-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -Wl,--wrap=memcpy -Wl,-z,relro -shared -Wl,-soname,libindigo-renderer.so.0d -o ../../dist/Linux/x64/lib/libindigo-renderer.so.0d CMakeFiles/indigo-renderer-shared.dir/src/indigo_render2d.cpp.o CMakeFiles/indigo-renderer-shared.dir/indigo-1.1.12/common/hacks/memcpy.c.o -lcairo ../../dist/Linux/x64/lib/librender2d.a ../../dist/Linux/x64/lib/libindigo.so.0d -lcairo ../../dist/Linux/x64/lib/libmolecule.a ../../dist/Linux/x64/lib/libgraph.a ../../dist/Linux/x64/lib/libcommon.a -lpthread -lz -ltinyxml cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cmake -E cmake_symlink_library ../../dist/Linux/x64/lib/libindigo-renderer.so.0d ../../dist/Linux/x64/lib/libindigo-renderer.so.0d ../../dist/Linux/x64/lib/libindigo-renderer.so make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 98%] Built target indigo-renderer-shared /usr/bin/make -f indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/build.make indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api/plugins/renderer /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/depend.internal". Scanning dependencies of target indigo-renderer-c-test-shared make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/build.make indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 98%] Building C object indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-shared.dir/tests/c/indigo-renderer-test.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api/plugins/renderer -I/indigo-1.1.12/api -I/indigo-1.1.12/api/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -o CMakeFiles/indigo-renderer-c-test-shared.dir/tests/c/indigo-renderer-test.c.o -c /indigo-1.1.12/api/plugins/renderer/tests/c/indigo-renderer-test.c Linking C executable ../../dist/Linux/x64/shared/indigo-renderer-c-test-shared cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-renderer-c-test-shared.dir/link.txt --verbose=1 /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -Wl,-z,relro CMakeFiles/indigo-renderer-c-test-shared.dir/tests/c/indigo-renderer-test.c.o -o ../../dist/Linux/x64/shared/indigo-renderer-c-test-shared -rdynamic ../../dist/Linux/x64/lib/libindigo-renderer.so.0d -lpthread ../../dist/Linux/x64/lib/libindigo.so.0d make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 98%] Built target indigo-renderer-c-test-shared /usr/bin/make -f indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/build.make indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/api/plugins/renderer /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/depend.internal". Scanning dependencies of target indigo-renderer-c-test-static make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/build.make indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [ 98%] Building C object indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/tests/c/indigo-renderer-test.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api/plugins/renderer -I/indigo-1.1.12/api -I/indigo-1.1.12/api/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -o CMakeFiles/indigo-renderer-c-test-static.dir/tests/c/indigo-renderer-test.c.o -c /indigo-1.1.12/api/plugins/renderer/tests/c/indigo-renderer-test.c /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 35 [ 99%] Building C object indigo-renderer/renderer/CMakeFiles/indigo-renderer-c-test-static.dir/indigo-1.1.12/common/hacks/memcpy.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -I/indigo-1.1.12/api/plugins/renderer -I/indigo-1.1.12/api -I/indigo-1.1.12/api/src -I/usr/include/cairo -I/indigo-1.1.12/common -I/indigo-1.1.12/common/.. -o CMakeFiles/indigo-renderer-c-test-static.dir/indigo-1.1.12/common/hacks/memcpy.c.o -c /indigo-1.1.12/common/hacks/memcpy.c Linking CXX executable ../../dist/Linux/x64/shared/indigo-renderer-c-test-static cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-renderer/renderer && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-renderer-c-test-static.dir/link.txt --verbose=1 /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -m64 -Wl,-z,relro -Wl,--wrap=memcpy CMakeFiles/indigo-renderer-c-test-static.dir/tests/c/indigo-renderer-test.c.o CMakeFiles/indigo-renderer-c-test-static.dir/indigo-1.1.12/common/hacks/memcpy.c.o -o ../../dist/Linux/x64/shared/indigo-renderer-c-test-static -rdynamic ../../dist/Linux/x64/lib/libindigo-renderer-static.a -lpthread ../../dist/Linux/x64/lib/libindigo-static.a ../../dist/Linux/x64/lib/libreaction.a ../../dist/Linux/x64/lib/librender2d.a -lcairo ../../dist/Linux/x64/lib/liblayout.a ../../dist/Linux/x64/lib/libmolecule.a ../../dist/Linux/x64/lib/libgraph.a ../../dist/Linux/x64/lib/libcommon.a -lpthread -lz -ltinyxml make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 35 [ 99%] Built target indigo-renderer-c-test-static /usr/bin/make -f indigo-cano/CMakeFiles/indigo-cano.dir/build.make indigo-cano/CMakeFiles/indigo-cano.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/utils/indigo-cano /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo-cano /indigo-1.1.12/build_scripts/indigo-utils/indigo-cano/CMakeFiles/indigo-cano.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-cano/CMakeFiles/indigo-cano.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-cano/CMakeFiles/indigo-cano.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-cano/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-cano/CMakeFiles/indigo-cano.dir/depend.internal". Scanning dependencies of target indigo-cano make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo-cano/CMakeFiles/indigo-cano.dir/build.make indigo-cano/CMakeFiles/indigo-cano.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 33 [100%] Building C object indigo-cano/CMakeFiles/indigo-cano.dir/main.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-cano && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -I/indigo-1.1.12/utils/indigo-cano/../../api -o CMakeFiles/indigo-cano.dir/main.c.o -c /indigo-1.1.12/utils/indigo-cano/main.c Linking C executable ../dist/Linux/x64/shared/indigo-cano cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-cano && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-cano.dir/link.txt --verbose=1 /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -Wl,-z,relro -pthread CMakeFiles/indigo-cano.dir/main.c.o -o ../dist/Linux/x64/shared/indigo-cano -rdynamic ../dist/Linux/x64/lib/libindigo.so.0d make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 33 [100%] Built target indigo-cano /usr/bin/make -f indigo-deco/CMakeFiles/indigo-deco.dir/build.make indigo-deco/CMakeFiles/indigo-deco.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/utils/indigo-deco /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo-deco /indigo-1.1.12/build_scripts/indigo-utils/indigo-deco/CMakeFiles/indigo-deco.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-deco/CMakeFiles/indigo-deco.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-deco/CMakeFiles/indigo-deco.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-deco/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-deco/CMakeFiles/indigo-deco.dir/depend.internal". Scanning dependencies of target indigo-deco make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo-deco/CMakeFiles/indigo-deco.dir/build.make indigo-deco/CMakeFiles/indigo-deco.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [100%] Building C object indigo-deco/CMakeFiles/indigo-deco.dir/main.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-deco && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -I/indigo-1.1.12/utils/indigo-deco/../../api -I/indigo-1.1.12/utils/indigo-deco/../../common -o CMakeFiles/indigo-deco.dir/main.c.o -c /indigo-1.1.12/utils/indigo-deco/main.c Linking CXX executable ../dist/Linux/x64/shared/indigo-deco cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-deco && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-deco.dir/link.txt --verbose=1 /usr/bin/c++ -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -Wl,-z,relro -pthread CMakeFiles/indigo-deco.dir/main.c.o -o ../dist/Linux/x64/shared/indigo-deco -rdynamic ../dist/Linux/x64/lib/libindigo.so.0d ../dist/Linux/x64/lib/libcommon.a -lpthread make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [100%] Built target indigo-deco /usr/bin/make -f indigo-depict/CMakeFiles/indigo-depict.dir/build.make indigo-depict/CMakeFiles/indigo-depict.dir/depend make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' cd /indigo-1.1.12/build_scripts/indigo-utils && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/utils/indigo-depict /indigo-1.1.12/build_scripts/indigo-utils /indigo-1.1.12/build_scripts/indigo-utils/indigo-depict /indigo-1.1.12/build_scripts/indigo-utils/indigo-depict/CMakeFiles/indigo-depict.dir/DependInfo.cmake --color= Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-depict/CMakeFiles/indigo-depict.dir/DependInfo.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-depict/CMakeFiles/indigo-depict.dir/depend.internal". Dependee "/indigo-1.1.12/build_scripts/indigo-utils/indigo-depict/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/indigo-1.1.12/build_scripts/indigo-utils/indigo-depict/CMakeFiles/indigo-depict.dir/depend.internal". Scanning dependencies of target indigo-depict make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/make -f indigo-depict/CMakeFiles/indigo-depict.dir/build.make indigo-depict/CMakeFiles/indigo-depict.dir/build make[4]: Entering directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [100%] Building C object indigo-depict/CMakeFiles/indigo-depict.dir/main.c.o cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-depict && /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -I/indigo-1.1.12/utils/indigo-depict/../../api -I/indigo-1.1.12/utils/indigo-depict/../../api/plugins/renderer -I/indigo-1.1.12/utils/indigo-depict/../../common -o CMakeFiles/indigo-depict.dir/main.c.o -c /indigo-1.1.12/utils/indigo-depict/main.c Linking C executable ../dist/Linux/x64/shared/indigo-depict cd /indigo-1.1.12/build_scripts/indigo-utils/indigo-depict && /usr/bin/cmake -E cmake_link_script CMakeFiles/indigo-depict.dir/link.txt --verbose=1 /usr/bin/cc -include /indigo-1.1.12/common/cmake/../hacks/gcc_preinclude.h -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -m64 -Wl,-z,relro -pthread CMakeFiles/indigo-depict.dir/main.c.o -o ../dist/Linux/x64/shared/indigo-depict -rdynamic ../dist/Linux/x64/lib/libindigo-renderer.so.0d ../dist/Linux/x64/lib/libindigo.so.0d make[4]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_report /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles [100%] Built target indigo-depict make[3]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' /usr/bin/cmake -E cmake_progress_start /indigo-1.1.12/build_scripts/indigo-utils/CMakeFiles 0 make[2]: Leaving directory '/indigo-1.1.12/build_scripts/indigo-utils' dh_auto_build make[1]: Leaving directory '/indigo-1.1.12' jh_build find api/java -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javac -g -cp /usr/share/java/jna.jar:/indigo-1.1.12/indigo.jar:/indigo-1.1.12/indigo-renderer.jar:/indigo-1.1.12/common-controls.jar:debian/_jh_build.indigo -d debian/_jh_build.indigo -source 1.5 -target 1.5 warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: api/java/src/main/java/com/ggasoftware/indigo/Indigo.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: api/java/src/main/java/com/ggasoftware/indigo/Indigo.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 4 warnings find api/java -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javadoc -locale en_US -classpath /usr/share/java/jna.jar:/indigo-1.1.12/indigo.jar:/indigo-1.1.12/indigo-renderer.jar:/indigo-1.1.12/common-controls.jar:debian/_jh_build.indigo -d debian/_jh_build.javadoc/api -quiet -notimestamp -source 1.5 /usr/lib/jvm/default-java/bin/jar cfm /indigo-1.1.12/indigo.jar ../_jh_manifest.indigo com find api/plugins/renderer/java -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javac -g -cp /usr/share/java/jna.jar:/indigo-1.1.12/indigo.jar:/indigo-1.1.12/indigo-renderer.jar:/indigo-1.1.12/common-controls.jar:debian/_jh_build.indigo-renderer -d debian/_jh_build.indigo-renderer -source 1.5 -target 1.5 warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings find api/plugins/renderer/java -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javadoc -locale en_US -classpath /usr/share/java/jna.jar:/indigo-1.1.12/indigo.jar:/indigo-1.1.12/indigo-renderer.jar:/indigo-1.1.12/common-controls.jar:debian/_jh_build.indigo-renderer -d debian/_jh_build.javadoc/api -quiet -notimestamp -source 1.5 /usr/lib/jvm/default-java/bin/jar cfm /indigo-1.1.12/indigo-renderer.jar ../_jh_manifest.indigo-renderer com find common/java/common-controls -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javac -g -cp /usr/share/java/jna.jar:/indigo-1.1.12/indigo.jar:/indigo-1.1.12/indigo-renderer.jar:/indigo-1.1.12/common-controls.jar:debian/_jh_build.common-controls -d debian/_jh_build.common-controls -source 1.5 -target 1.5 warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings find common/java/common-controls -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javadoc -locale en_US -classpath /usr/share/java/jna.jar:/indigo-1.1.12/indigo.jar:/indigo-1.1.12/indigo-renderer.jar:/indigo-1.1.12/common-controls.jar:debian/_jh_build.common-controls -d debian/_jh_build.javadoc/api -quiet -notimestamp -source 1.5 /usr/lib/jvm/default-java/bin/jar cfm /indigo-1.1.12/common-controls.jar ../_jh_manifest.common-controls com find utils/chemdiff -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javac -g -cp /usr/share/java/jna.jar:/indigo-1.1.12/indigo.jar:/indigo-1.1.12/indigo-renderer.jar:/indigo-1.1.12/common-controls.jar:debian/_jh_build.chemdiff -d debian/_jh_build.chemdiff -source 1.5 -target 1.5 warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings find utils/chemdiff -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javadoc -locale en_US -classpath /usr/share/java/jna.jar:/indigo-1.1.12/indigo.jar:/indigo-1.1.12/indigo-renderer.jar:/indigo-1.1.12/common-controls.jar:debian/_jh_build.chemdiff -d debian/_jh_build.javadoc/api -quiet -notimestamp -source 1.5 /usr/lib/jvm/default-java/bin/jar cfm /indigo-1.1.12/chemdiff.jar ../_jh_manifest.chemdiff com dh_auto_test debian/rules binary dh binary --with autotools_dev,javahelper,python2 --parallel dh_testroot dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/indigo-1.1.12' dh_installdirs mkdir -p debian/python-indigo/usr/lib/`pyversions -d`/dist-packages install /indigo-1.1.12/api/python/indigo.py /indigo-1.1.12/api/plugins/renderer/python/*.py \ debian/python-indigo/usr/lib/`pyversions -d`/dist-packages install /indigo-1.1.12/utils/chemdiff/chemdiff.sh \ debian/indigo-utils/usr/bin/chemdiff dh_auto_install make[1]: Leaving directory '/indigo-1.1.12' dh_install jh_installjavadoc dh_installdocs dh_installchangelogs dh_installman dh_python2 W: dh_python2:479: Please add dh-python package to Build-Depends dh_lintian dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends dh_compress dh_fixperms dh_strip debian/rules override_dh_makeshlibs make[1]: Entering directory '/indigo-1.1.12' dh_makeshlibs -V make[1]: Leaving directory '/indigo-1.1.12' dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/indigo-utils/usr/bin/indigo-deco was not linked against libstdc++.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/indigo-utils/usr/bin/indigo-deco was not linked against libgcc_s.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libindigo-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: Depends field of package python-indigo: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: package python-indigo: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-indigo: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: Depends field of package libindigo-java: unknown substitution variable ${shlibs:Depends} dh_md5sums dh_builddeb dpkg-deb: building package 'indigo-utils' in '../indigo-utils_1.1.12-1_amd64.deb'. dpkg-deb: building package 'libindigo0d' in '../libindigo0d_1.1.12-1_amd64.deb'. dpkg-deb: building package 'libindigo-dev' in '../libindigo-dev_1.1.12-1_amd64.deb'. dpkg-deb: building package 'python-indigo' in '../python-indigo_1.1.12-1_all.deb'. dpkg-deb: building package 'libindigo-java' in '../libindigo-java_1.1.12-1_all.deb'. dpkg-genchanges >../indigo_1.1.12-1_amd64.changes dpkg-genchanges: including full source code in upload dpkg-source --after-build indigo-1.1.12 dpkg-buildpackage: full upload (original source is included)