Reading package lists... Building dependency tree... Reading state information... NOTICE: 'nco' packaging is maintained in the 'Git' version control system at: git://anonscm.debian.org/pkg-grass/nco.git Need to get 4,421 kB of source archives. Get:1 http://urika:3142/ftp.debian.org/debian/ sid/main nco 4.5.1-2 (dsc) [2,053 B] Get:2 http://urika:3142/ftp.debian.org/debian/ sid/main nco 4.5.1-2 (tar) [4,407 kB] Get:3 http://urika:3142/ftp.debian.org/debian/ sid/main nco 4.5.1-2 (diff) [12.5 kB] gpgv: keyblock resource `/tmp/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Mon 24 Aug 2015 01:29:20 PM UTC using RSA key ID E88D4AF1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./nco_4.5.1-2.dsc dpkg-source: info: extracting nco in nco-4.5.1 dpkg-source: info: unpacking nco_4.5.1.orig.tar.gz dpkg-source: info: unpacking nco_4.5.1-2.debian.tar.xz dpkg-source: info: applying unofficial-typo.patch Fetched 4,421 kB in 0s (21.0 MB/s) Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: antlr autoconf automake autopoint autotools-dev bison bsdmainutils ca-certificates ca-certificates-java debhelper default-jre-headless dh-autoreconf file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base gsl-bin hdf5-helpers icu-devtools intltool-debian java-common libantlr-dev libantlr-java libasprintf0v5 libasyncns0 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcroco3 libcups2 libcurl3-gnutls libcurl4-gnutls-dev libdap-dev libdap17v5 libdapclient6v5 libdapserver7v5 libdbus-1-3 libexpat1 libffi6 libfl-dev libflac8 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgsl0-dev libgsl0ldbl libhdf5-8 libhdf5-cpp-8 libhdf5-dev libhogweed4 libice6 libicu-dev libicu55 libidn11 libintl-perl libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjson-c2 liblcms2-2 libldap-2.4-2 libmagic1 libnetcdf-dev libnetcdf7 libnettle6 libnspr4 libnss3 libogg0 libp11-kit0 libpcsclite1 libpipeline1 libpng12-0 libpulse0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsndfile1 libsqlite3-0 libssh2-1 libtasn1-6 libtext-unidecode-perl libtool libudunits2-0 libudunits2-dev libunistring0 libvorbis0a libvorbisenc2 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxml2-dev libxtst6 m4 man-db netcdf-bin openjdk-7-jre-headless openssl pkg-config po-debconf tex-common texinfo tzdata-java ucf uuid-dev x11-common zlib1g-dev 0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 97.3 MB of archives. After this operation, 285 MB of additional disk space will be used. Get:1 http://urika:3142/ftp.debian.org/debian/ sid/main libjson-c2 amd64 0.11-4 [24.8 kB] Get:2 http://urika:3142/ftp.debian.org/debian/ sid/main libasprintf0v5 amd64 0.19.5.1-1 [32.2 kB] Get:3 http://urika:3142/ftp.debian.org/debian/ sid/main libnettle6 amd64 3.1.1-4 [189 kB] Get:4 http://urika:3142/ftp.debian.org/debian/ sid/main libhogweed4 amd64 3.1.1-4 [136 kB] Get:5 http://urika:3142/ftp.debian.org/debian/ sid/main libffi6 amd64 3.2.1-3 [20.1 kB] Get:6 http://urika:3142/ftp.debian.org/debian/ sid/main libp11-kit0 amd64 0.23.1-3 [112 kB] Get:7 http://urika:3142/ftp.debian.org/debian/ sid/main libtasn1-6 amd64 4.5-2 [49.6 kB] Get:8 http://urika:3142/ftp.debian.org/debian/ sid/main libgnutls-deb0-28 amd64 3.3.17-1 [716 kB] Get:9 http://urika:3142/ftp.debian.org/debian/ sid/main libsasl2-modules-db amd64 2.1.26.dfsg1-13 [67.0 kB] Get:10 http://urika:3142/ftp.debian.org/debian/ sid/main libsasl2-2 amd64 2.1.26.dfsg1-13 [104 kB] Get:11 http://urika:3142/ftp.debian.org/debian/ sid/main libldap-2.4-2 amd64 2.4.42+dfsg-1 [223 kB] Get:12 http://urika:3142/ftp.debian.org/debian/ sid/main libmagic1 amd64 1:5.22+15-2 [249 kB] Get:13 http://urika:3142/ftp.debian.org/debian/ sid/main groff-base amd64 1.22.3-1 [1,205 kB] Get:14 http://urika:3142/ftp.debian.org/debian/ sid/main bsdmainutils amd64 9.0.6 [183 kB] Get:15 http://urika:3142/ftp.debian.org/debian/ sid/main libpipeline1 amd64 1.4.1-1 [27.8 kB] Get:16 http://urika:3142/ftp.debian.org/debian/ sid/main man-db amd64 2.7.2-1 [1,000 kB] Get:17 http://urika:3142/ftp.debian.org/debian/ sid/main libsigsegv2 amd64 2.10-4+b1 [29.2 kB] Get:18 http://urika:3142/ftp.debian.org/debian/ sid/main m4 amd64 1.4.17-4 [254 kB] Get:19 http://urika:3142/ftp.debian.org/debian/ sid/main libfl-dev amd64 2.5.39-8+b1 [75.4 kB] Get:20 http://urika:3142/ftp.debian.org/debian/ sid/main flex amd64 2.5.39-8+b1 [422 kB] Get:21 http://urika:3142/ftp.debian.org/debian/ sid/main libasyncns0 amd64 0.8-5 [12.5 kB] Get:22 http://urika:3142/ftp.debian.org/debian/ sid/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:23 http://urika:3142/ftp.debian.org/debian/ sid/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:24 http://urika:3142/ftp.debian.org/debian/ sid/main libdbus-1-3 amd64 1.8.20-1 [170 kB] Get:25 http://urika:3142/ftp.debian.org/debian/ sid/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:26 http://urika:3142/ftp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.44.1-1.1 [2,461 kB] Get:27 http://urika:3142/ftp.debian.org/debian/ sid/main libicu55 amd64 55.1-4 [7,655 kB] Get:28 http://urika:3142/ftp.debian.org/debian/ sid/main libxml2 amd64 2.9.2+really2.9.1+dfsg1-0.1 [905 kB] Get:29 http://urika:3142/ftp.debian.org/debian/ sid/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:30 http://urika:3142/ftp.debian.org/debian/ sid/main libexpat1 amd64 2.1.0-7 [80.0 kB] Get:31 http://urika:3142/ftp.debian.org/debian/ sid/main libpng12-0 amd64 1.2.50-2+b2 [172 kB] Get:32 http://urika:3142/ftp.debian.org/debian/ sid/main libfreetype6 amd64 2.5.2-4 [466 kB] Get:33 http://urika:3142/ftp.debian.org/debian/ sid/main ucf all 3.0030 [69.7 kB] Get:34 http://urika:3142/ftp.debian.org/debian/ sid/main fonts-dejavu-core all 2.35-1 [1,064 kB] Get:35 http://urika:3142/ftp.debian.org/debian/ sid/main fontconfig-config all 2.11.0-6.3 [273 kB] Get:36 http://urika:3142/ftp.debian.org/debian/ sid/main libfontconfig1 amd64 2.11.0-6.3 [329 kB] Get:37 http://urika:3142/ftp.debian.org/debian/ sid/main libgfortran3 amd64 5.2.1-15 [253 kB] Get:38 http://urika:3142/ftp.debian.org/debian/ sid/main x11-common all 1:7.7+9 [287 kB] Get:39 http://urika:3142/ftp.debian.org/debian/ sid/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:40 http://urika:3142/ftp.debian.org/debian/ sid/main liblcms2-2 amd64 2.6-3+b3 [141 kB] Get:41 http://urika:3142/ftp.debian.org/debian/ sid/main libogg0 amd64 1.3.2-1 [19.9 kB] Get:42 http://urika:3142/ftp.debian.org/debian/ sid/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:43 http://urika:3142/ftp.debian.org/debian/ sid/main libflac8 amd64 1.3.1-4 [218 kB] Get:44 http://urika:3142/ftp.debian.org/debian/ sid/main libvorbis0a amd64 1.3.4-2 [92.9 kB] Get:45 http://urika:3142/ftp.debian.org/debian/ sid/main libvorbisenc2 amd64 1.3.4-2 [77.9 kB] Get:46 http://urika:3142/ftp.debian.org/debian/ sid/main libsndfile1 amd64 1.0.25-9.1 [214 kB] Get:47 http://urika:3142/ftp.debian.org/debian/ sid/main libssh2-1 amd64 1.5.0-2+b1 [133 kB] Get:48 http://urika:3142/ftp.debian.org/debian/ sid/main libunistring0 amd64 0.9.3-5.2+b1 [288 kB] Get:49 http://urika:3142/ftp.debian.org/debian/ sid/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:50 http://urika:3142/ftp.debian.org/debian/ sid/main libxdmcp6 amd64 1:1.1.2-1 [26.3 kB] Get:51 http://urika:3142/ftp.debian.org/debian/ sid/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:52 http://urika:3142/ftp.debian.org/debian/ sid/main libx11-data all 2:1.6.3-1 [128 kB] Get:53 http://urika:3142/ftp.debian.org/debian/ sid/main libx11-6 amd64 2:1.6.3-1 [742 kB] Get:54 http://urika:3142/ftp.debian.org/debian/ sid/main libx11-xcb1 amd64 2:1.6.3-1 [176 kB] Get:55 http://urika:3142/ftp.debian.org/debian/ sid/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:56 http://urika:3142/ftp.debian.org/debian/ sid/main libxi6 amd64 2:1.7.4-1+b2 [79.7 kB] Get:57 http://urika:3142/ftp.debian.org/debian/ sid/main libxtst6 amd64 2:1.2.2-1+b1 [27.3 kB] Get:58 http://urika:3142/ftp.debian.org/debian/ sid/main openssl amd64 1.0.2d-1 [695 kB] Get:59 http://urika:3142/ftp.debian.org/debian/ sid/main ca-certificates all 20150426 [208 kB] Get:60 http://urika:3142/ftp.debian.org/debian/ sid/main java-common all 0.52 [136 kB] Get:61 http://urika:3142/ftp.debian.org/debian/ sid/main default-jre-headless amd64 2:1.7-52 [9,072 B] Get:62 http://urika:3142/ftp.debian.org/debian/ sid/main libnspr4 amd64 2:4.10.9-1 [117 kB] Get:63 http://urika:3142/ftp.debian.org/debian/ sid/main libsqlite3-0 amd64 3.8.11.1-1 [454 kB] Get:64 http://urika:3142/ftp.debian.org/debian/ sid/main libnss3 amd64 2:3.20-1 [1,141 kB] Get:65 http://urika:3142/ftp.debian.org/debian/ sid/main ca-certificates-java all 20140324 [13.7 kB] Get:66 http://urika:3142/ftp.debian.org/debian/ sid/main tzdata-java all 2015f-1 [79.9 kB] Get:67 http://urika:3142/ftp.debian.org/debian/ sid/main libcups2 amd64 2.0.3-10 [296 kB] Get:68 http://urika:3142/ftp.debian.org/debian/ sid/main libjpeg62-turbo amd64 1:1.4.1-2 [126 kB] Get:69 http://urika:3142/ftp.debian.org/debian/ sid/main libpcsclite1 amd64 1.8.14-1 [56.2 kB] Get:70 http://urika:3142/ftp.debian.org/debian/ sid/main libpulse0 amd64 6.0-5 [262 kB] Get:71 http://urika:3142/ftp.debian.org/debian/ sid/main openjdk-7-jre-headless amd64 7u79-2.5.6-1 [39.7 MB] Get:72 http://urika:3142/ftp.debian.org/debian/ sid/main file amd64 1:5.22+15-2 [60.1 kB] Get:73 http://urika:3142/ftp.debian.org/debian/ sid/main gettext-base amd64 0.19.5.1-1 [122 kB] Get:74 http://urika:3142/ftp.debian.org/debian/ sid/main libidn11 amd64 1.32-1 [171 kB] Get:75 http://urika:3142/ftp.debian.org/debian/ sid/main libantlr-java all 2.7.7+dfsg-6 [433 kB] Get:76 http://urika:3142/ftp.debian.org/debian/ sid/main antlr all 2.7.7+dfsg-6 [13.2 kB] Get:77 http://urika:3142/ftp.debian.org/debian/ sid/main autoconf all 2.69-9 [338 kB] Get:78 http://urika:3142/ftp.debian.org/debian/ sid/main autotools-dev all 20140911.1 [70.5 kB] Get:79 http://urika:3142/ftp.debian.org/debian/ sid/main automake all 1:1.15-3 [735 kB] Get:80 http://urika:3142/ftp.debian.org/debian/ sid/main autopoint all 0.19.5.1-1 [426 kB] Get:81 http://urika:3142/ftp.debian.org/debian/ sid/main libbison-dev amd64 2:3.0.2.dfsg-2 [426 kB] Get:82 http://urika:3142/ftp.debian.org/debian/ sid/main bison amd64 2:3.0.2.dfsg-2 [765 kB] Get:83 http://urika:3142/ftp.debian.org/debian/ sid/main gettext amd64 0.19.5.1-1 [1,459 kB] Get:84 http://urika:3142/ftp.debian.org/debian/ sid/main intltool-debian all 0.35.0+20060710.2 [25.9 kB] Get:85 http://urika:3142/ftp.debian.org/debian/ sid/main po-debconf all 1.0.18 [248 kB] Get:86 http://urika:3142/ftp.debian.org/debian/ sid/main debhelper all 9.20150811 [817 kB] Get:87 http://urika:3142/ftp.debian.org/debian/ sid/main libtool all 2.4.2-1.11 [190 kB] Get:88 http://urika:3142/ftp.debian.org/debian/ sid/main dh-autoreconf all 10 [15.2 kB] Get:89 http://urika:3142/ftp.debian.org/debian/ sid/main libgsl0ldbl amd64 1.16+dfsg-4 [826 kB] Get:90 http://urika:3142/ftp.debian.org/debian/ sid/main gsl-bin amd64 1.16+dfsg-4 [28.0 kB] Get:91 http://urika:3142/ftp.debian.org/debian/ sid/main hdf5-helpers amd64 1.8.13+docs-15.1 [36.5 kB] Get:92 http://urika:3142/ftp.debian.org/debian/ sid/main icu-devtools amd64 55.1-4 [177 kB] Get:93 http://urika:3142/ftp.debian.org/debian/ sid/main libantlr-dev amd64 2.7.7+dfsg-6+b1 [201 kB] Get:94 http://urika:3142/ftp.debian.org/debian/ sid/main librtmp1 amd64 2.4+20150115.gita107cef-1+b2 [60.1 kB] Get:95 http://urika:3142/ftp.debian.org/debian/ sid/main libcurl3-gnutls amd64 7.44.0-1 [264 kB] Get:96 http://urika:3142/ftp.debian.org/debian/ sid/main libcurl4-gnutls-dev amd64 7.44.0-1 [343 kB] Get:97 http://urika:3142/ftp.debian.org/debian/ sid/main libdap17v5 amd64 3.14.0-4 [588 kB] Get:98 http://urika:3142/ftp.debian.org/debian/ sid/main libdapserver7v5 amd64 3.14.0-4 [101 kB] Get:99 http://urika:3142/ftp.debian.org/debian/ sid/main libdapclient6v5 amd64 3.14.0-4 [197 kB] Get:100 http://urika:3142/ftp.debian.org/debian/ sid/main libicu-dev amd64 55.1-4 [8,553 kB] Get:101 http://urika:3142/ftp.debian.org/debian/ sid/main libxml2-dev amd64 2.9.2+really2.9.1+dfsg1-0.1 [798 kB] Get:102 http://urika:3142/ftp.debian.org/debian/ sid/main uuid-dev amd64 2.26.2-9 [80.2 kB] Get:103 http://urika:3142/ftp.debian.org/debian/ sid/main pkg-config amd64 0.28-1 [57.5 kB] Get:104 http://urika:3142/ftp.debian.org/debian/ sid/main libdap-dev amd64 3.14.0-4 [991 kB] Get:105 http://urika:3142/ftp.debian.org/debian/ sid/main libgsl0-dev amd64 1.16+dfsg-4 [914 kB] Get:106 http://urika:3142/ftp.debian.org/debian/ sid/main libhdf5-8 amd64 1.8.13+docs-15.1 [1,060 kB] Get:107 http://urika:3142/ftp.debian.org/debian/ sid/main libhdf5-cpp-8 amd64 1.8.13+docs-15.1 [118 kB] Get:108 http://urika:3142/ftp.debian.org/debian/ sid/main zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:109 http://urika:3142/ftp.debian.org/debian/ sid/main libjpeg62-turbo-dev amd64 1:1.4.1-2 [481 kB] Get:110 http://urika:3142/ftp.debian.org/debian/ sid/main libjpeg-dev all 1:1.4.1-2 [51.9 kB] Get:111 http://urika:3142/ftp.debian.org/debian/ sid/main libhdf5-dev amd64 1.8.13+docs-15.1 [5,281 kB] Get:112 http://urika:3142/ftp.debian.org/debian/ sid/main libintl-perl all 1.24-1 [833 kB] Get:113 http://urika:3142/ftp.debian.org/debian/ sid/main libnetcdf7 amd64 1:4.4.0~rc2-1 [313 kB] Get:114 http://urika:3142/ftp.debian.org/debian/ sid/main libnetcdf-dev amd64 1:4.4.0~rc2-1 [71.7 kB] Get:115 http://urika:3142/ftp.debian.org/debian/ sid/main libtext-unidecode-perl all 1.23-1 [102 kB] Get:116 http://urika:3142/ftp.debian.org/debian/ sid/main libudunits2-0 amd64 2.2.19-1 [75.2 kB] Get:117 http://urika:3142/ftp.debian.org/debian/ sid/main libudunits2-dev amd64 2.2.19-1 [284 kB] Get:118 http://urika:3142/ftp.debian.org/debian/ sid/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:119 http://urika:3142/ftp.debian.org/debian/ sid/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:120 http://urika:3142/ftp.debian.org/debian/ sid/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:121 http://urika:3142/ftp.debian.org/debian/ sid/main libxml-libxml-perl amd64 2.0116+dfsg-5 [363 kB] Get:122 http://urika:3142/ftp.debian.org/debian/ sid/main netcdf-bin amd64 1:4.4.0~rc2-1 [227 kB] Get:123 http://urika:3142/ftp.debian.org/debian/ sid/main tex-common all 6.02 [609 kB] Get:124 http://urika:3142/ftp.debian.org/debian/ sid/main texinfo amd64 6.0.0.dfsg.1-3 [1,064 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 97.3 MB in 1s (54.4 MB/s) Selecting previously unselected package libjson-c2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15325 files and directories currently installed.) Preparing to unpack .../libjson-c2_0.11-4_amd64.deb ... Unpacking libjson-c2:amd64 (0.11-4) ... Selecting previously unselected package libasprintf0v5:amd64. Preparing to unpack .../libasprintf0v5_0.19.5.1-1_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.5.1-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.1.1-4_amd64.deb ... Unpacking libnettle6:amd64 (3.1.1-4) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../libhogweed4_3.1.1-4_amd64.deb ... Unpacking libhogweed4:amd64 (3.1.1-4) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.2.1-3_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-3) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.23.1-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.1-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.5-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.5-2) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.17-1_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.17-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-13_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-13) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-13_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-13) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.42+dfsg-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-1_amd64.deb ... Unpacking groff-base (1.22.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6_amd64.deb ... Unpacking bsdmainutils (9.0.6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.2-1_amd64.deb ... Unpacking man-db (2.7.2-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-4+b1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-4+b1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-4_amd64.deb ... Unpacking m4 (1.4.17-4) ... Selecting previously unselected package libfl-dev:amd64. Preparing to unpack .../libfl-dev_2.5.39-8+b1_amd64.deb ... Unpacking libfl-dev:amd64 (2.5.39-8+b1) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.5.39-8+b1_amd64.deb ... Unpacking flex (2.5.39-8+b1) ... Selecting previously unselected package libasyncns0:amd64. Preparing to unpack .../libasyncns0_0.8-5_amd64.deb ... Unpacking libasyncns0:amd64 (0.8-5) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../libavahi-common-data_0.6.31-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.31-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../libavahi-common3_0.6.31-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.31-5) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../libdbus-1-3_1.8.20-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.8.20-1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../libavahi-client3_0.6.31-5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.31-5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.44.1-1.1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.44.1-1.1) ... Selecting previously unselected package libicu55:amd64. Preparing to unpack .../libicu55_55.1-4_amd64.deb ... Unpacking libicu55:amd64 (55.1-4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.2+really2.9.1+dfsg1-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.9.2+really2.9.1+dfsg1-0.1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.8-3+b1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.8-3+b1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-7_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-7) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.50-2+b2_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-2+b2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.5.2-4_amd64.deb ... Unpacking libfreetype6:amd64 (2.5.2-4) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.35-1_all.deb ... Unpacking fonts-dejavu-core (2.35-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.0-6.3_all.deb ... Unpacking fontconfig-config (2.11.0-6.3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.0-6.3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.3) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_5.2.1-15_amd64.deb ... Unpacking libgfortran3:amd64 (5.2.1-15) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+9_all.deb ... Unpacking x11-common (1:7.7+9) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.9-1+b1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+b1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../liblcms2-2_2.6-3+b3_amd64.deb ... Unpacking liblcms2-2:amd64 (2.6-3+b3) ... Selecting previously unselected package libogg0:amd64. Preparing to unpack .../libogg0_1.3.2-1_amd64.deb ... Unpacking libogg0:amd64 (1.3.2-1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libflac8:amd64. Preparing to unpack .../libflac8_1.3.1-4_amd64.deb ... Unpacking libflac8:amd64 (1.3.1-4) ... Selecting previously unselected package libvorbis0a:amd64. Preparing to unpack .../libvorbis0a_1.3.4-2_amd64.deb ... Unpacking libvorbis0a:amd64 (1.3.4-2) ... Selecting previously unselected package libvorbisenc2:amd64. Preparing to unpack .../libvorbisenc2_1.3.4-2_amd64.deb ... Unpacking libvorbisenc2:amd64 (1.3.4-2) ... Selecting previously unselected package libsndfile1:amd64. Preparing to unpack .../libsndfile1_1.0.25-9.1_amd64.deb ... Unpacking libsndfile1:amd64 (1.0.25-9.1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.5.0-2+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.5.0-2+b1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2+b1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.2-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-3+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.10-3+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.3-1_all.deb ... Unpacking libx11-data (2:1.6.3-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.3-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.3-1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../libx11-xcb1_2%3a1.6.3-1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.3-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../libxi6_2%3a1.7.4-1+b2_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.4-1+b2) ... Selecting previously unselected package libxtst6:amd64. Preparing to unpack .../libxtst6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package openssl. Preparing to unpack .../openssl_1.0.2d-1_amd64.deb ... Unpacking openssl (1.0.2d-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../ca-certificates_20150426_all.deb ... Unpacking ca-certificates (20150426) ... Selecting previously unselected package java-common. Preparing to unpack .../java-common_0.52_all.deb ... Unpacking java-common (0.52) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../default-jre-headless_2%3a1.7-52_amd64.deb ... Unpacking default-jre-headless (2:1.7-52) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../libnspr4_2%3a4.10.9-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.10.9-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.11.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.11.1-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../libnss3_2%3a3.20-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.20-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../ca-certificates-java_20140324_all.deb ... Unpacking ca-certificates-java (20140324) ... Selecting previously unselected package tzdata-java. Preparing to unpack .../tzdata-java_2015f-1_all.deb ... Unpacking tzdata-java (2015f-1) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../libcups2_2.0.3-10_amd64.deb ... Unpacking libcups2:amd64 (2.0.3-10) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.4.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.4.1-2) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../libpcsclite1_1.8.14-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.14-1) ... Selecting previously unselected package libpulse0:amd64. Preparing to unpack .../libpulse0_6.0-5_amd64.deb ... Unpacking libpulse0:amd64 (6.0-5) ... Selecting previously unselected package openjdk-7-jre-headless:amd64. Preparing to unpack .../openjdk-7-jre-headless_7u79-2.5.6-1_amd64.deb ... Unpacking openjdk-7-jre-headless:amd64 (7u79-2.5.6-1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2_amd64.deb ... Unpacking file (1:5.22+15-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.5.1-1_amd64.deb ... Unpacking gettext-base (0.19.5.1-1) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.32-1_amd64.deb ... Unpacking libidn11:amd64 (1.32-1) ... Selecting previously unselected package libantlr-java. Preparing to unpack .../libantlr-java_2.7.7+dfsg-6_all.deb ... Unpacking libantlr-java (2.7.7+dfsg-6) ... Selecting previously unselected package antlr. Preparing to unpack .../antlr_2.7.7+dfsg-6_all.deb ... Unpacking antlr (2.7.7+dfsg-6) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-9_all.deb ... Unpacking autoconf (2.69-9) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20140911.1_all.deb ... Unpacking autotools-dev (20140911.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.15-3_all.deb ... Unpacking automake (1:1.15-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../autopoint_0.19.5.1-1_all.deb ... Unpacking autopoint (0.19.5.1-1) ... Selecting previously unselected package libbison-dev:amd64. Preparing to unpack .../libbison-dev_2%3a3.0.2.dfsg-2_amd64.deb ... Unpacking libbison-dev:amd64 (2:3.0.2.dfsg-2) ... Selecting previously unselected package bison. Preparing to unpack .../bison_2%3a3.0.2.dfsg-2_amd64.deb ... Unpacking bison (2:3.0.2.dfsg-2) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.5.1-1_amd64.deb ... Unpacking gettext (0.19.5.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.2_all.deb ... Unpacking intltool-debian (0.35.0+20060710.2) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20150811_all.deb ... Unpacking debhelper (9.20150811) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.2-1.11_all.deb ... Unpacking libtool (2.4.2-1.11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_10_all.deb ... Unpacking dh-autoreconf (10) ... Selecting previously unselected package libgsl0ldbl:amd64. Preparing to unpack .../libgsl0ldbl_1.16+dfsg-4_amd64.deb ... Unpacking libgsl0ldbl:amd64 (1.16+dfsg-4) ... Selecting previously unselected package gsl-bin. Preparing to unpack .../gsl-bin_1.16+dfsg-4_amd64.deb ... Unpacking gsl-bin (1.16+dfsg-4) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../hdf5-helpers_1.8.13+docs-15.1_amd64.deb ... Unpacking hdf5-helpers (1.8.13+docs-15.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../icu-devtools_55.1-4_amd64.deb ... Unpacking icu-devtools (55.1-4) ... Selecting previously unselected package libantlr-dev. Preparing to unpack .../libantlr-dev_2.7.7+dfsg-6+b1_amd64.deb ... Unpacking libantlr-dev (2.7.7+dfsg-6+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../librtmp1_2.4+20150115.gita107cef-1+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20150115.gita107cef-1+b2) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../libcurl3-gnutls_7.44.0-1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.44.0-1) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../libcurl4-gnutls-dev_7.44.0-1_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (7.44.0-1) ... Selecting previously unselected package libdap17v5:amd64. Preparing to unpack .../libdap17v5_3.14.0-4_amd64.deb ... Unpacking libdap17v5:amd64 (3.14.0-4) ... Selecting previously unselected package libdapserver7v5:amd64. Preparing to unpack .../libdapserver7v5_3.14.0-4_amd64.deb ... Unpacking libdapserver7v5:amd64 (3.14.0-4) ... Selecting previously unselected package libdapclient6v5:amd64. Preparing to unpack .../libdapclient6v5_3.14.0-4_amd64.deb ... Unpacking libdapclient6v5:amd64 (3.14.0-4) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../libicu-dev_55.1-4_amd64.deb ... Unpacking libicu-dev:amd64 (55.1-4) ... Selecting previously unselected package libxml2-dev:amd64. Preparing to unpack .../libxml2-dev_2.9.2+really2.9.1+dfsg1-0.1_amd64.deb ... Unpacking libxml2-dev:amd64 (2.9.2+really2.9.1+dfsg1-0.1) ... Selecting previously unselected package uuid-dev:amd64. Preparing to unpack .../uuid-dev_2.26.2-9_amd64.deb ... Unpacking uuid-dev:amd64 (2.26.2-9) ... Selecting previously unselected package pkg-config. Preparing to unpack .../pkg-config_0.28-1_amd64.deb ... Unpacking pkg-config (0.28-1) ... Selecting previously unselected package libdap-dev:amd64. Preparing to unpack .../libdap-dev_3.14.0-4_amd64.deb ... Unpacking libdap-dev:amd64 (3.14.0-4) ... Selecting previously unselected package libgsl0-dev. Preparing to unpack .../libgsl0-dev_1.16+dfsg-4_amd64.deb ... Unpacking libgsl0-dev (1.16+dfsg-4) ... Selecting previously unselected package libhdf5-8:amd64. Preparing to unpack .../libhdf5-8_1.8.13+docs-15.1_amd64.deb ... Unpacking libhdf5-8:amd64 (1.8.13+docs-15.1) ... Selecting previously unselected package libhdf5-cpp-8:amd64. Preparing to unpack .../libhdf5-cpp-8_1.8.13+docs-15.1_amd64.deb ... Unpacking libhdf5-cpp-8:amd64 (1.8.13+docs-15.1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.4.1-2_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.4.1-2) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../libjpeg-dev_1%3a1.4.1-2_all.deb ... Unpacking libjpeg-dev (1:1.4.1-2) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../libhdf5-dev_1.8.13+docs-15.1_amd64.deb ... Unpacking libhdf5-dev (1.8.13+docs-15.1) ... Selecting previously unselected package libintl-perl. Preparing to unpack .../libintl-perl_1.24-1_all.deb ... Unpacking libintl-perl (1.24-1) ... Selecting previously unselected package libnetcdf7. Preparing to unpack .../libnetcdf7_1%3a4.4.0~rc2-1_amd64.deb ... Unpacking libnetcdf7 (1:4.4.0~rc2-1) ... Selecting previously unselected package libnetcdf-dev. Preparing to unpack .../libnetcdf-dev_1%3a4.4.0~rc2-1_amd64.deb ... Unpacking libnetcdf-dev (1:4.4.0~rc2-1) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../libtext-unidecode-perl_1.23-1_all.deb ... Unpacking libtext-unidecode-perl (1.23-1) ... Selecting previously unselected package libudunits2-0:amd64. Preparing to unpack .../libudunits2-0_2.2.19-1_amd64.deb ... Unpacking libudunits2-0:amd64 (2.2.19-1) ... Selecting previously unselected package libudunits2-dev. Preparing to unpack .../libudunits2-dev_2.2.19-1_amd64.deb ... Unpacking libudunits2-dev (2.2.19-1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ... Unpacking libxml-sax-base-perl (1.07-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../libxml-libxml-perl_2.0116+dfsg-5_amd64.deb ... Unpacking libxml-libxml-perl (2.0116+dfsg-5) ... Selecting previously unselected package netcdf-bin. Preparing to unpack .../netcdf-bin_1%3a4.4.0~rc2-1_amd64.deb ... Unpacking netcdf-bin (1:4.4.0~rc2-1) ... Selecting previously unselected package tex-common. Preparing to unpack .../tex-common_6.02_all.deb ... Unpacking tex-common (6.02) ... Selecting previously unselected package texinfo. Preparing to unpack .../texinfo_6.0.0.dfsg.1-3_amd64.deb ... Unpacking texinfo (6.0.0.dfsg.1-3) ... Processing triggers for systemd (224-2) ... Setting up libjson-c2:amd64 (0.11-4) ... Setting up libasprintf0v5:amd64 (0.19.5.1-1) ... Setting up libnettle6:amd64 (3.1.1-4) ... Setting up libhogweed4:amd64 (3.1.1-4) ... Setting up libffi6:amd64 (3.2.1-3) ... Setting up libp11-kit0:amd64 (0.23.1-3) ... Setting up libtasn1-6:amd64 (4.5-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.17-1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-1) ... Setting up libmagic1:amd64 (1:5.22+15-2) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.2-1) ... Building database of manual pages ... Setting up libsigsegv2:amd64 (2.10-4+b1) ... Setting up m4 (1.4.17-4) ... Setting up libfl-dev:amd64 (2.5.39-8+b1) ... Setting up flex (2.5.39-8+b1) ... Setting up libasyncns0:amd64 (0.8-5) ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libdbus-1-3:amd64 (1.8.20-1) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libglib2.0-0:amd64 (2.44.1-1.1) ... No schema files found: doing nothing. Setting up libicu55:amd64 (55.1-4) ... Setting up libxml2:amd64 (2.9.2+really2.9.1+dfsg1-0.1) ... Setting up libcroco3:amd64 (0.6.8-3+b1) ... Setting up libexpat1:amd64 (2.1.0-7) ... Setting up libpng12-0:amd64 (1.2.50-2+b2) ... Setting up libfreetype6:amd64 (2.5.2-4) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up fontconfig-config (2.11.0-6.3) ... Setting up libfontconfig1:amd64 (2.11.0-6.3) ... Setting up libgfortran3:amd64 (5.2.1-15) ... Setting up x11-common (1:7.7+9) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up liblcms2-2:amd64 (2.6-3+b3) ... Setting up libogg0:amd64 (1.3.2-1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libflac8:amd64 (1.3.1-4) ... Setting up libvorbis0a:amd64 (1.3.4-2) ... Setting up libvorbisenc2:amd64 (1.3.4-2) ... Setting up libsndfile1:amd64 (1.0.25-9.1) ... Setting up libssh2-1:amd64 (1.5.0-2+b1) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.3-1) ... Setting up libx11-6:amd64 (2:1.6.3-1) ... Setting up libx11-xcb1:amd64 (2:1.6.3-1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxi6:amd64 (2:1.7.4-1+b2) ... Setting up libxtst6:amd64 (2:1.2.2-1+b1) ... Setting up openssl (1.0.2d-1) ... Setting up ca-certificates (20150426) ... Setting up java-common (0.52) ... Setting up libnspr4:amd64 (2:4.10.9-1) ... Setting up libsqlite3-0:amd64 (3.8.11.1-1) ... Setting up libnss3:amd64 (2:3.20-1) ... Setting up tzdata-java (2015f-1) ... Setting up libcups2:amd64 (2.0.3-10) ... Setting up libjpeg62-turbo:amd64 (1:1.4.1-2) ... Setting up libpcsclite1:amd64 (1.8.14-1) ... Setting up libpulse0:amd64 (6.0-5) ... Setting up file (1:5.22+15-2) ... Setting up gettext-base (0.19.5.1-1) ... Setting up libidn11:amd64 (1.32-1) ... Setting up libantlr-java (2.7.7+dfsg-6) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20140911.1) ... Setting up automake (1:1.15-3) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.5.1-1) ... Setting up libbison-dev:amd64 (2:3.0.2.dfsg-2) ... Setting up bison (2:3.0.2.dfsg-2) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up gettext (0.19.5.1-1) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20150811) ... Setting up libtool (2.4.2-1.11) ... Setting up dh-autoreconf (10) ... Setting up libgsl0ldbl:amd64 (1.16+dfsg-4) ... Setting up gsl-bin (1.16+dfsg-4) ... Setting up hdf5-helpers (1.8.13+docs-15.1) ... Setting up icu-devtools (55.1-4) ... Setting up libantlr-dev (2.7.7+dfsg-6+b1) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+b2) ... Setting up libcurl3-gnutls:amd64 (7.44.0-1) ... Setting up libcurl4-gnutls-dev:amd64 (7.44.0-1) ... Setting up libdap17v5:amd64 (3.14.0-4) ... Setting up libdapserver7v5:amd64 (3.14.0-4) ... Setting up libdapclient6v5:amd64 (3.14.0-4) ... Setting up libicu-dev:amd64 (55.1-4) ... Setting up libxml2-dev:amd64 (2.9.2+really2.9.1+dfsg1-0.1) ... Setting up uuid-dev:amd64 (2.26.2-9) ... Setting up pkg-config (0.28-1) ... Setting up libdap-dev:amd64 (3.14.0-4) ... Setting up libgsl0-dev (1.16+dfsg-4) ... Setting up libhdf5-8:amd64 (1.8.13+docs-15.1) ... Setting up libhdf5-cpp-8:amd64 (1.8.13+docs-15.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.4.1-2) ... Setting up libjpeg-dev (1:1.4.1-2) ... Setting up libhdf5-dev (1.8.13+docs-15.1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libintl-perl (1.24-1) ... Setting up libnetcdf7 (1:4.4.0~rc2-1) ... Setting up libnetcdf-dev (1:4.4.0~rc2-1) ... Setting up libtext-unidecode-perl (1.23-1) ... Setting up libudunits2-0:amd64 (2.2.19-1) ... Setting up libudunits2-dev (2.2.19-1) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0116+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up netcdf-bin (1:4.4.0~rc2-1) ... Setting up tex-common (6.02) ... update-language: texlive-base not installed and configured, doing nothing! Setting up texinfo (6.0.0.dfsg.1-3) ... Setting up default-jre-headless (2:1.7-52) ... Setting up antlr (2.7.7+dfsg-6) ... Setting up openjdk-7-jre-headless:amd64 (7u79-2.5.6-1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20140324) ... done. Processing triggers for libc-bin (2.19-19) ... Processing triggers for systemd (224-2) ... Processing triggers for ca-certificates (20150426) ... Updating certificates in /etc/ssl/certs... 180 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... Adding debian:ACCVRAIZ1.pem Adding debian:ACEDICOM_Root.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AddTrust_External_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:A-Trust-nQual-03.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Certigna.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:CNNIC_ROOT.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:ComSign_CA.pem Adding debian:ComSign_Secured_CA.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:EC-ACC.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IGC_A.pem Adding debian:Izenpe.com.pem Adding debian:Juur-SK.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:PSCProcert.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:SG_TRUST_SERVICES_RACINE.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:S-TRUST_Universal_Root_CA.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Taiwan_GRCA.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:WoSign_China.pem Adding debian:WoSign.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:spi-cacert-2008.pem done. done. Killed old client process Internet Systems Consortium DHCP Client 4.3.2 Copyright 2004-2015 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/ Listening on LPF/eth0/12:90:7d:99:ab:a4 Sending on LPF/eth0/12:90:7d:99:ab:a4 Sending on Socket/fallback DHCPRELEASE on eth0 to 10.0.3.1 port 67 dpkg-buildpackage: source package nco dpkg-buildpackage: source version 4.5.1-2 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Bas Couwenberg dpkg-source --before-build nco-4.5.1 dpkg-buildpackage: host architecture amd64 debian/rules clean dh clean --with autoreconf \ --buildsystem autoconf \ --parallel dh_testdir -O--buildsystem=autoconf -O--parallel dh_auto_clean -O--buildsystem=autoconf -O--parallel dh_autoreconf_clean -O--buildsystem=autoconf -O--parallel debian/rules override_dh_clean make[1]: Entering directory '/nco-4.5.1' dh_clean data/big.nc \ data/in_1.nc \ data/in_2.nc \ data/nco_bm.stderr \ debian/rules.old \ doc/nco.info \ doc/nco.info-1 \ doc/nco.info-2 \ doc/nco.info-3 make[1]: Leaving directory '/nco-4.5.1' dpkg-source -b nco-4.5.1 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building nco using existing ./nco_4.5.1.orig.tar.gz dpkg-source: info: building nco in nco_4.5.1-2.debian.tar.xz dpkg-source: info: building nco in nco_4.5.1-2.dsc debian/rules build dh build --with autoreconf \ --buildsystem autoconf \ --parallel dh_testdir -O--buildsystem=autoconf -O--parallel dh_autoreconf -O--buildsystem=autoconf -O--parallel libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `autobld'. libtoolize: copying file `autobld/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: copying file `m4/libtool.m4' libtoolize: copying file `m4/ltoptions.m4' libtoolize: copying file `m4/ltsugar.m4' libtoolize: copying file `m4/ltversion.m4' libtoolize: copying file `m4/lt~obsolete.m4' debian/rules override_dh_auto_configure make[1]: Entering directory '/nco-4.5.1' dh_auto_configure -- \ --libdir=/usr/lib/nco \ --enable-gsl \ --enable-ncap2 \ --disable-nco_cplusplus \ --enable-dap \ --enable-netcdf4 \ --enable-udunits2 \ --disable-udunits \ --disable-static ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --libdir=/usr/lib/nco --enable-gsl --enable-ncap2 --disable-nco_cplusplus --enable-dap --enable-netcdf4 --enable-udunits2 --disable-udunits --disable-static checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for bison... bison -y checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for ANSI C header files... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking whether C++ compiler implements namespaces... yes checking whether C++ compiler has working valarray... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking for /opt/local/include/netcdf.h... no checking for /opt/local/lib/libnetcdf.a... no checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking for gcc option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for daperror in -lnetcdf... yes configure: DAP support enabled checking for getopt_long... yes checking for _g95_ac_array in -lf95... no checking for sin in -lm... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... yes checking for acosf... yes checking for asinf... yes checking for atanf... yes checking for atan2f... yes checking for cosf... yes checking for expf... yes checking for fabsf... yes checking for fmodf... yes checking for log10f... yes checking for logf... yes checking for powf... yes checking for sinf... yes checking for sqrtf... yes checking for tanf... yes checking for erff... yes checking for erfcf... yes checking for gammaf... yes checking for acoshf... yes checking for asinhf... yes checking for atanhf... yes checking for coshf... yes checking for sinhf... yes checking for tanhf... yes checking for ceilf... yes checking for floorf... yes checking for nearbyint... yes checking for rint... yes checking for round... yes checking for trunc... yes checking for nearbyintf... yes checking for rintf... yes checking for roundf... yes checking for truncf... yes checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strcasestr... yes ########################################################## # Sorting out MacOSX build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... runantlr configure: antlr library was found ######################################## # Testing for ESMF support # ######################################## checking for main in -lnetcdf_c++... no checking for main in -lnetcdff... no checking for main in -ldl... yes checking for main in -lgfortran... no checking for main in -lrt... yes checking for ESMC_Initialize in -lesmf... no configure: These ESMF library and header tests must succeed for ESMF support: checking for /usr/local/include/ESMC.h... no configure: WARNING: ESMF support disabled (missing/unusable library or header file) ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /usr/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## checking for XML_ParserCreate in -lexpat... no checking for /usr/include/udunits2/udunits2.h... no checking for /usr/include/udunits2.h... yes checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... yes checking for /usr/lib/i386-linux-gnu/libudunits2.a... no checking for /opt/local/include/udunits2/udunits2.h... no checking for /opt/local/lib/libudunits2.a... no checking for ... no configure: WARNING: file was not found but will still attempt to build NCO with UDUnits2 support. configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: checking for ut_read_xml in -ludunits2... yes checking udunits2.h usability... yes checking udunits2.h presence... yes checking for udunits2.h... yes configure: UDUnits2 support enabled checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... gcc CFLAGS............... -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE CPP.................. gcc -E CPPFLAGS............. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include CXX.................. g++ CXXFLAGS............. -g -O2 -fstack-protector-strong -Wformat -Werror=format-security ENABLE_DAP........... yes ENABLE_ESMF...........no ENABLE_GSL........... yes ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... yes GSL_ROOT............. /usr HAVE_ANTLR........... runantlr HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HOST................. HOSTNAME............. fbuild-nco LDFLAGS.............. -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu LIBS................. -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. x86_64-pc-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* make[1]: Leaving directory '/nco-4.5.1' debian/rules override_dh_auto_build make[1]: Entering directory '/nco-4.5.1' dh_auto_build make -j1 make[2]: Entering directory '/nco-4.5.1' make all-recursive make[3]: Entering directory '/nco-4.5.1' Making all in data make[4]: Entering directory '/nco-4.5.1/data' /usr/bin/ncgen -o big.nc big.cdl /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc /bin/bash: ncks: command not found Makefile:488: recipe for target 'in_4c.nc' failed make[4]: [in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl make[4]: Leaving directory '/nco-4.5.1/data' Making all in src make[4]: Entering directory '/nco-4.5.1/src' Making all in nco make[5]: Entering directory '/nco-4.5.1/src/nco' /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_att_utl.lo nco_att_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_aux.lo nco_aux.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_bnr.lo nco_bnr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cln_utl.lo nco_cln_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o nco_cln_utl.c: In function 'nco_cln_clc_org': nco_cln_utl.c:683:6: warning: implicit declaration of function 'strcasestr' [-Wimplicit-function-declaration] if(strcasestr(fl_bs_sng," from ") || strcasestr(fl_bs_sng," since ") || strcasestr(fl_bs_sng," after ")){ ^ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_dmn.lo nco_cnf_dmn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_typ.lo nco_cnf_typ.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnk.lo nco_cnk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_arm.lo nco_cnv_arm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_csm.lo nco_cnv_csm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ctl.lo nco_ctl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dbg.lo nco_dbg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dmn_utl.lo nco_dmn_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_fl_utl.lo nco_fl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o nco_fl_utl.c: In function 'nco_create_mode_prs': nco_fl_utl.c:67:6: warning: implicit declaration of function 'strcasestr' [-Wimplicit-function-declaration] if(strcasestr("classic",fl_fmt_sng) && !strcasestr(fl_fmt_sng,"netcdf4")){ ^ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_utl.lo nco_grp_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_trv.lo nco_grp_trv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lmt.lo nco_lmt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': nco_lst_utl.c:38:23: warning: unknown escape sequence: '\.' const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ ^ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_md5.lo nco_md5.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mmr.lo nco_mmr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_msa.lo nco_msa.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mss_val.lo nco_mss_val.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_netcdf.lo nco_netcdf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_pck.lo nco_pck.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ppc.lo nco_ppc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_prn.lo nco_prn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rec_var.lo nco_rec_var.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rgr.lo nco_rgr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_flt.lo nco_rth_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_utl.lo nco_rth_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scl_utl.lo nco_scl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scm.lo nco_scm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sld.lo nco_sld.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sng_utl.lo nco_sng_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_srm.lo nco_srm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_lst.lo nco_var_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_rth.lo nco_var_rth.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_scv.lo nco_var_scv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_utl.lo nco_var_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.5.1 -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o libnco.la -rpath /usr/lib/nco nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o -O2 -fopenmp -Wl,-z -Wl,relro -fopenmp -pthread -Wl,-soname -Wl,libnco-4.5.1.so -o .libs/libnco-4.5.1.so libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-4.5.1.so" "libnco.so") libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_utl.o ncap_utl.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap.o ncap.c test -f ncap_yacc.c || /bin/bash ../../autobld/ylwrap ncap_yacc.y y.tab.c ncap_yacc.c y.tab.h `echo ncap_yacc.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output ncap_yacc.output -- bison -y -d --name-prefix=nco_yy updating ncap_yacc.h gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_yacc.o ncap_yacc.c test -f ncap_lex.c || /bin/bash ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_lex.o ncap_lex.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncap ncap_utl.o ncap.o ncap_yacc.o ncap_lex.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncap ncap_utl.o ncap.o ncap_yacc.o ncap_lex.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncatted.o ncatted.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncatted ncatted.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncatted ncatted.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncbo.o ncbo.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncbo ncbo.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncbo ncbo.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncecat.o ncecat.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncecat ncecat.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncecat ncecat.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncflint.o ncflint.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncflint ncflint.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncflint ncflint.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncks.o ncks.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncks ncks.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncks ncks.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncpdq.o ncpdq.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncpdq ncpdq.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncpdq ncpdq.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncra.o ncra.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncra ncra.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncra ncra.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncrename.o ncrename.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncrename ncrename.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncrename ncrename.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncwa.o ncwa.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncwa ncwa.o ncap_utl.o ncap_lex.o ncap_yacc.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o ncap_yacc.o -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -L/usr/lib/x86_64-linux-gnu ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco make[5]: Leaving directory '/nco-4.5.1/src/nco' Making all in nco++ make[5]: Entering directory '/nco-4.5.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o Invoke.o Invoke.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o ncap2.o ncap2.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o ncap2_utl.o ncap2_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o sdo_utl.o sdo_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o sym_cls.o sym_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_cls.o fmc_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_all_cls.o fmc_all_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_gsl_cls.o fmc_gsl_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o prs_cls.o prs_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o NcapVar.o NcapVar.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o NcapVarVector.o NcapVarVector.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoLexer.o ncoLexer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoParser.o ncoParser.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoTree.o ncoTree.cpp gcc -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_gsl.o nco_gsl.c /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L../nco -lnco -lantlr -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lm -lcurl -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -o ncap2 Invoke.o ncap2.o ncap2_utl.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -L../nco /nco-4.5.1/src/nco/.libs/libnco.so -lantlr -L/usr/lib/x86_64-linux-gnu -L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lz -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco make[5]: Leaving directory '/nco-4.5.1/src/nco++' make[5]: Entering directory '/nco-4.5.1/src' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/nco-4.5.1/src' make[4]: Leaving directory '/nco-4.5.1/src' Making all in man make[4]: Entering directory '/nco-4.5.1/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/nco-4.5.1/man' Making all in doc make[4]: Entering directory '/nco-4.5.1/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/bash /nco-4.5.1/autobld/missing makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/bash /nco-4.5.1/autobld/missing makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[4]: Leaving directory '/nco-4.5.1/doc' make[4]: Entering directory '/nco-4.5.1' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/nco-4.5.1' make[3]: Leaving directory '/nco-4.5.1' make[2]: Leaving directory '/nco-4.5.1' cd doc && /usr/bin/make clean && /usr/bin/make html make[2]: Entering directory '/nco-4.5.1/doc' test -z "nco.dvi nco.pdf nco.ps nco.html" \ || rm -rf nco.dvi nco.pdf nco.ps nco.html rm -rf .libs _libs rm -rf nco.t2d nco.t2p rm -f *.lo make[2]: Leaving directory '/nco-4.5.1/doc' make[2]: Entering directory '/nco-4.5.1/doc' rm -rf nco.htp if /bin/bash /nco-4.5.1/autobld/missing makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ else \ rm -rf nco.htp; exit 1; \ fi make[2]: Leaving directory '/nco-4.5.1/doc' cd doc && /usr/bin/make nco.info && sed -i 's/xmp\/fgr[0-9].png/\/usr\/share\/doc\/nco\/&/' nco.info* make[2]: Entering directory '/nco-4.5.1/doc' make[2]: 'nco.info' is up to date. make[2]: Leaving directory '/nco-4.5.1/doc' make[1]: Leaving directory '/nco-4.5.1' debian/rules override_dh_auto_test make[1]: Entering directory '/nco-4.5.1' # currently the check phase badly fails dh_auto_test || echo "Ignoring test failures" make -j1 test make[2]: Entering directory '/nco-4.5.1' make check make[3]: Entering directory '/nco-4.5.1' Making check in data make[4]: Entering directory '/nco-4.5.1/data' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/nco-4.5.1/data' Making check in src make[4]: Entering directory '/nco-4.5.1/src' Making check in nco make[5]: Entering directory '/nco-4.5.1/src/nco' make check-TESTS make[6]: Entering directory '/nco-4.5.1/src/nco' make[7]: Entering directory '/nco-4.5.1/src/nco' ============================================================================ Testsuite summary for NCO netCDF Operators 4.5.1 ============================================================================ # TOTAL: 0 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[7]: Leaving directory '/nco-4.5.1/src/nco' make[6]: Leaving directory '/nco-4.5.1/src/nco' make[5]: Leaving directory '/nco-4.5.1/src/nco' Making check in nco++ make[5]: Entering directory '/nco-4.5.1/src/nco++' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/nco-4.5.1/src/nco++' make[5]: Entering directory '/nco-4.5.1/src' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/nco-4.5.1/src' make[4]: Leaving directory '/nco-4.5.1/src' Making check in man make[4]: Entering directory '/nco-4.5.1/man' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/nco-4.5.1/man' Making check in doc make[4]: Entering directory '/nco-4.5.1/doc' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/nco-4.5.1/doc' make[4]: Entering directory '/nco-4.5.1' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/nco-4.5.1' make[3]: Leaving directory '/nco-4.5.1' cd bm && ./nco_bm.pl --regress INFO: Testing for required modules Time::HiRes ... found. IO::Socket ... found. You do not have a $DATA directory defined and the test files are several GB. Where would you like to write the test data? Data will be placed in the indicated directory, under nco_bm, using the '--caseid' option to set the name of the subdirectory, if any. [/tmp] or specify: You entered [] Making /tmp/nco_bm/ & continuing Cannot get socket - continuing anyway. failed to execute: ncks --lbr_rcd: No such file or directory ncap2 test 01: Testing float modulo float......................................................... SVa ok ncap2 test 02: Testing foo=log(e_flt)^1 (may fail on old AIX TODO ncap57)......................... SVn ok ncap2 test 03: Testing foo=log(e_dbl)^1........................................................... SVn ok ncap2 test 04: Testing foo=4*atan(1).............................................................. SVn ok ncap2 test 05: Testing foo=erf(1) (may fail on old AIX TODO ncap57)............................... SVn prov. ok ncap2 test 06: Testing foo=gamma(0.5) (may fail on old AIX TODO ncap57)........................... SVn prov. ok ncap2 test 07: Testing foo=sin(pi/2).............................................................. SVn ok ncap2 test 08: Testing foo=cos(pi)................................................................ SVn ok ncap2 test 09: Casting variable with same name as dimension (ncap81 failed with netCDF4 until n... SVn ok ncap2 test 10: Casting variable with a single dim of sz=1 (ncap81 failed with netCDF4 until net... SVn ok ncap2 test 11: Verify non-averaging functions min/max on coordinate variables..................... SVn ok ncatted test 01: Modify all existing units attributes to meter second-1............................. SVa ok ncatted test 02: Change _FillValue attribute from 1.0e36 to 0.0 in netCDF3 file..................... SVn ok ncatted test 03: Create new _FillValue attribute.................................................... SVn ok ncatted test 04: Pad header with 1000B extra for future metadata (failure OK/expected since test ... SVn ok ncatted test 05: Variable wildcarding (requires regex).............................................. SVn ok ncbo test 01: Difference a packed variable and be sure everything is zero or _FillValue by ave... SVn ok ncbo test 02: Whole file difference with broadcasting (OK to fail here fxm TODO nco757. Works ... SVn ok ncbo test 03: difference scalar missing value.................................................... SVn ok ncbo test 04: difference with missing value attribute............................................ SVn ok ncbo test 05: difference without missing value attribute......................................... SVn ok ncbo test 06: _FillValues differ between files................................................... SVa ok ncbo test 07: _FillValue in one variable (not both variables).................................... SVn ok ncbo test 08: ncdiff symbolically linked to ncbo................................................. SVn ok ncbo test 09: difference with missing value attribute............................................ SVn ok ncbo test 10: Difference without missing value attribute......................................... SVn ok ncbo test 11: Difference which tests broadcasting and changing variable IDs...................... SVn ok ncbo test 12: Difference which tests 3D broadcasting............................................. SVn ok ncbo test 13: Addition + 3D broadcasting+ MSA.................................................... SVn ok ncbo test 14: Copy associated coordinates -v three_dmn_rec_var................................... SVa ok ncbo test 15: Concatenate variables with different ID ordering................................... SVa ok nces test 01: ensemble mean of int across two files.............................................. SVn ok nces test 02: ensemble sum of missing value across two files..................................... SVn ok nces test 03: ensemble mean with missing values across two files................................. SVn ok nces test 04: ensemble min of float across two files............................................. SVn ok nces test 05: scale factor + add_offset packing/unpacking........................................ SVn ok nces test 06: ensemble mean of integer with integer missing values across two files.............. SVa ok nces test 07: ensemble mean of 3D variable across two files with MSA............................. SVn ok nces test 08: Check op with OpenMP............................................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 ERR: FAILURE in nces failure: Check op with OpenMP ERR::EXPLAIN: Result: [] != Expected: [n2 = 1] nces test 09: Ensemble mean of variable packed with netCDF convention across three files......... SVn ok nces test 10: Ensemble mean of variable packed with HDF convention across three files............ SVn ok nces test 11: Test file loop..................................................................... SVa ok ncecat test 01: concatenate two files containing only scalar variables............................. SVa ok ncecat test 02: concatenate two 3D vars with multihyperslabbing.................................... SVn ok ncecat test 03: Concatenate variables with different ID ordering................................... SVn ok ncecat test 04: Verify concatentated coordinates do not gain new record dimension.................. SVa ok ncflint test 01: identity weighting................................................................. SVn ok ncflint test 02: identity interpolation............................................................. SVn ok ncflint test 03: switch order of occurrence to test for commutivity................................. SVn ok ncflint test 04: output type float when interpolating between two packed floats..................... SVn ok ncflint test 05: Concatenate variables with different ID ordering................................... SVa ok ncks test 01: Create T42 variable named one, uniformly 1.0 over globe in %tmp_fl_03%. (FAILURE... SVn ok ncks test 02: extract filename string............................................................ SVa ok ncks test 03: extract a dimension................................................................ SVa ok ncks test 04: extract a variable with limits..................................................... SVn ok ncks test 05: extract variable of type NC_INT.................................................... SVn ok ncks test 06: Multi-slab lat and lon with srd.................................................... SVa ok ncks test 07: Multi-slab with redundant hyperslabs............................................... SVa ok ncks test 08: Multi-slab with coordinates........................................................ SVa ok ncks test 09: Double-wrapped hyperslab........................................................... SVa ok ncks test 10: dimension slice using UDUnits library (fails without UDUnits library support)...... SVn ok ncks test 11: dim slice using UDUnits library and cal 365_days (fails without UDUnits library ... SVa ok ncks test 12: dim slice using UDUnits library and cal 360_days (fails without UDUnits library ... SVa ok ncks test 13: dimension slice using UDUnit conversion (fails without UDUnits library support).... SVn prov. ok ncks test 14: variable wildcards A (fails without regex library)................................. SVn ok ncks test 15: variable wildcards B (fails without regex library)................................. SVn ok ncks test 16: Print byte value................................................................... SVn ok ncks test 17: CF convention coordinates attribute................................................ SVn ok ncks test 18: Create/copy of global _FillValue................................................... SVn ok ncks test 19: Auxiliary coordinates writing -X 0.,1.,-30.,-29. -v gds_3dvar...................... SVa ok ncks test 20: Extract CF 'ancillary_variables' variables (netCDF3 file).......................... SVa ok ncks test 21: Select last element using negative one index....................................... SVa ok ncks test 22: Auxiliary coordinate writing two variables......................................... SVa ok ncks test 23: Test -X auxiliary coordinates where underlying dimension is a non-coordinate dim... SVa ok ncks test 24: Test attribute writing for DSD compression......................................... SVa ok ncks test 25: Test DSD compression rounding to hundreds.......................................... SVn ok ncks test 26: Test DSD attribute does not overwrite pre-existing rounder values.................. SVa ok ncks test 27: Test DSD attribute does overwrite pre-existing sharper values...................... SVa ok ncks test 28: Test attribute writing for NSD compression......................................... SVa ok ncks test 29: Test NSD compression rounding to three significant digits.......................... SVn ok ncks test 30: Test NSD attribute does not overwrite pre-existing rounder values.................. SVa ok ncks test 31: Test NSD attribute does overwrite pre-existing sharper values...................... SVa ok ncks test 32: Test that -x exclusion of coordinate variables only works with -C.................. SVa ok ncks test 33: Extract 'climatology' variables.................................................... SVn ok ncpdq test 01: Reverse coordinate -a -lat -v lat.................................................. SVn ok ncpdq test 02: Reverse 3D variable a -lat,-lev,-lon -v three_dmn_var.............................. SVn ok ncpdq test 03: Re-order 3D variable (no associated coordinates) -C -a lon,lat -v three_dmn_var ... SVn ok ncpdq test 04: Re-order 3D variable (associated coordinates) -a lon,lat -v three_dmn_var ......... SVn ok ncpdq test 05: Re-order 3D variable with MSA -C -a lat,lon,time -v three_dmn_var_dbl -d time,0,... SVn ok ncpdq test 06: Re-order 3D variable with MSA -C -a lat,lon,time -v three_dmn_var_dbl -d time,0,... SVa ok ncpdq test 07: Re-order 3D variable with MSA (stride) -a lat,lon,time -d time,1,3,2 -d lat,1,1,... SVa ok ncpdq test 08: Re-order 3D variable with MSA+ reversal of time dim -C -a lat,lon,-time -v three... SVn ok ncpdq test 09: Re-order 3D variable with MSA and --msa_usr_rdr flag -C -a lon,lat -v three_dmn_... SVa ok ncpdq test 10: Re-order 2D variable (-C, no MSA, no-reorder) -v two_dmn_var -a lat,lev............ SVa ok ncpdq test 11: Re-order 2D variable (-C, no MSA) -v two_dmn_var -a lev,lat........................ SVa ok ncpdq test 12: Re-order 2D variable (no -C, no MSA) -v two_dmn_var -a lev,lat..................... SVa ok ncpdq test 13: Re-order 2D variable (-C, MSA) -v two_dmn_var -a lev,lat -d lat,1,1 -d lev,1,1..... SVa ok ncpdq test 14: Re-order 2D variable (no -C, MSA) -v two_dmn_var -a lev,lat -d lat,1,1 -d lev,1,... SVa ok ncpdq test 15: Re-order 2D variable with record (-C, no MSA) -v two_dmn_rec_var -C -a lev,time.... SVa ok ncpdq test 16: Re-order 2D variable with record (no -C, no MSA) -v two_dmn_rec_var -a lev,time.... SVa ok ncpdq test 17: Re-order 2D variable with record (-C, MSA) -a lev,time -d time,1,1 -d lev,1,1 -v... SVa ok ncpdq test 18: Re-order 2D variable with record (no -C, MSA) -a lev,time -d time,1,1 -d lev,1,1... SVa ok ncpdq test 19: Reverse/Re-order 3D variable -a -lat,-time -v three_dmn_var_dbl -d time,1,1 -d l... SVa ok ncpdq test 20: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (no MSA) Test1...... SVa ok ncpdq test 21: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (no MSA) Test2...... SVa ok ncpdq test 22: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test1 read ... SVa ok ncpdq test 23: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test2 read ... SVa ok ncpdq test 24: Re-order several variables -a lat,time -v ty,three_dmn_rec_var Test3 check recor... SVa ok ncpdq test 25: Re-order several variables -a lat,time -v ty,three_dmn_rec_var Test4 check non r... SVa ok ncpdq test 26: Reverse/Re-order 4D variable -a lev,time,-lon,-lat -v four_dmn_rec_var (MSA)....... SVa ok ncpdq test 27: Re-order 3D variable (only 1 in -a) -a lat,time -v PS,three_dmn_var_crd (MSA)...... SVa ok ncpdq test 28: Re-order all variables -a lat,time (MSA)........................................... SVa ok ncpdq test 29: Pack and then unpack scalar (uses only add_offset) -P all_new -v upk............... SVn ok ncpdq test 30: Unpack 1D variable with MSA -C P upk -v rec_var_dbl_mss_val_dbl_pck -d time,0,4 ... SVn ok ncpdq test 31: Pack 3D variable with MSA -C -P all_xst -v three_dmn_var_dbl -d time,0,2 -d time... SVn ok ncpdq test 32: Unpack 1D variable twice to verify first unpacking does not inadvertently store ... SVn ok ncpdq test 33: Unpack 1D variable with netCDF convention.......................................... SVn ok ncpdq test 34: Unpack 1D variable with HDF convention............................................. SVn ok ncpdq test 35: Re-pack 1D variable from HDF convention to netCDF convention....................... SVn ok ncrcat test 01: Concatenate float with double missing values across two files...................... SVn ok ncrcat test 02: Concatenate record coordinate-bounded variable across two non-monotonic files...... SVa ok ncrcat test 03: Concatenate float variable with multislabs across two files........................ SVn ok ncrcat test 04: Concatenate int variable with multislabs across two files.......................... SVn ok ncrcat test 05: Concatenate float 4D variable with multislabs across two files..................... SVn ok ncrcat test 06: Concatenate 1D variable with stride across two files............................... SVa ok ncrcat test 07: Concatenate 1D variable with stride across three files............................. SVa ok ncrcat test 08: Concatenate 1D variable with stride across files with different record dimension... SVa ok ncrcat test 09: Concatenate 1D variable across two files no limits. Requires UDUnits............... SVa ok ncrcat test 10: Concatenate 1D variable across three files double limits. Requires UDUnits......... SVa ok ncrcat test 11: Concatenate 1D variable across three files double limits2. Requires UDUnits........ SVa ok ncrcat test 12: Concatenate 1D variable across three files time stamp limits2. Requires UDUnits.... SVa ok ncrcat test 13: Cat. 1D var over 3 files with large stride. Requires UDUnits....................... SVa ok ncrcat test 14: Cat. 1D var over 3 files coord limits+stride. Requires UDUnits..................... SVa ok ncrcat test 15: Cat. 1D var over three files date-stamp limits+stride. Requires UDUnits............ SVa ok ncrcat test 16: Cat. 1D var over 3 files date-stamp limits+stride. Requires UDUnits................ SVa ok ncrcat test 17: Cat. 1D variable over 3 files dmn limits+stride. Requires UDUnits.................. SVa ok ncrcat test 18: Cat. 1D var over 4 files different record sizes. Requires UDUnits.................. SVa ok ncrcat test 19: Cat. 1D var over 4 files with srd=4 different rec sizes. Requires UDUnits.......... SVa ok ncrcat test 20: Cat. 1D var over 4 files with srd=3 str/end timestamps. Requires UDUnits........... SVa ok ncrcat test 21: Append records to existing file without copying original........................... SVn ok ncrcat test 22: Detect input_complete when stride skips user-specified idx_end_max................. SVa ok ncrcat test 23: Another detect input_complete when stride skips user-specified idx_end_max......... SVa ok ncra test 01: record sdn of float with double missing values across two files.................... SVn ok ncra test 02: record mean of int across two files................................................ SVn ok ncra test 03: record mean of float with double missing values.................................... SVn ok ncra test 04: record mean of float with integer missing values................................... SVn ok ncra test 05: record mean of integer with integer missing values................................. SVn ok ncra test 06: record mean of integer with integer missing values across two files................ SVn ok ncra test 07: record mean of integer with float missing values................................... SVn ok ncra test 08: record mean of integer with float missing values across two files.................. SVn ok ncra test 09: record mean of packed double with double missing values............................ SVn ok ncra test 10: record mean of packed double to test precision..................................... SVn ok ncra test 11: record mean of packed float to test precision...................................... SVn ok ncra test 12: pass through non-record (i.e., non-processed) packed data to output................ SVn ok ncra test 13: record mean of float with double missing values across two files................... SVn ok ncra test 14: record min of float with double missing values across two files.................... SVn ok ncra test 15: record max of float with double missing values across two files.................... SVn ok ncra test 16: record ttl of float with double missing values across two files.................... SVn ok ncra test 17: record rms of float with double missing values across two files.................... SVn ok ncra test 18: Return mean time coordinate (when computing totals) across two files............... SVn ok ncra test 19: Return total record (when computing totals) across two files....................... SVn ok ncra test 20: Return record average of cell-based geodesic data.................................. SVa ok ncra test 21: Check op with OpenMP............................................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 ERR: FAILURE in ncra failure: Check op with OpenMP ERR::EXPLAIN: Result: [] != Expected: [n2 = 1] ncra test 22: Append records to existing file without copying original........................... SVn ok ncra test 23: Treatment of missing values with MRO and rth_dbl................................... SVn ok ncra test 24: Handle scale factor and missing value with rth_dbl................................. SVn ok ncra test 25: Test per-file weighting with --wgt 28,29,30........................................ SVa ok ncra test 26: Test per-record weighting with --wgt=one_dmn_rec_wgt............................... SVn ok ncwa test 01: Creating %tmp_fl_03% again (FAILURE netCDF4 ncrename nco821) ...................... SVn ok ncwa test 02: normalize by denominator upper hemisphere (FAILURE netCDF4 ncrename nco821)........ SVn ok ncwa test 03: return average coordinate coordinate variable during minimization for non-coordi... SVn ok ncwa test 04: pass through non-averaged (i.e., non-processed) packed data to output.............. SVn ok ncwa test 05: do not normalize by denominator (FAILURE netCDF4 nco946)........................... SVn ok ncwa test 06: average with missing value attribute............................................... SVn ok ncwa test 07: average without missing value attribute............................................ SVn ok ncwa test 08: average masked coordinate.......................................................... SVn ok ncwa test 09: average masked variable............................................................ SVn ok ncwa test 10: average masked, weighted coordinate................................................ SVn ok ncwa test 11: average masked, weighted variable.................................................. SVn ok ncwa test 12: weight conforms to variable first time............................................. SVn ok ncwa test 13: average all missing values with weights............................................ SVn ok ncwa test 14: average some missing values with unity weights..................................... SVn ok ncwa test 15: average masked variable with some missing values................................... SVn ok ncwa test 16: average uniform field with uniform weights......................................... SVn ok ncwa test 17: average uniform field with asymmetric weights...................................... SVn ok ncwa test 18: average asymmetric field with asymmetric weights................................... SVn ok ncwa test 19: min switch on type double, some missing values..................................... SVn ok ncwa test 20: Dimension reduction with min switch and missing values............................. SVn ok ncwa test 21: Dimension reduction with min switch................................................ SVn ok ncwa test 22: Dimension reduction on type int with min switch and missing values................. SVn ok ncwa test 23: Dimension reduction on type int variable........................................... SVn ok ncwa test 24: Dimension reduction on type short variable with min switch and missing values...... SVn ok ncwa test 25: Dimension reduction on type short variable......................................... SVn ok ncwa test 26: Dimension reduction with min flag on type float variable........................... SVn ok ncwa test 27: Max flag on type float variable.................................................... SVn ok ncwa test 28: Dimension reduction on type double variable with max switch and missing values..... SVn ok ncwa test 29: Dimension reduction on type double variable........................................ SVn ok ncwa test 30: Dimension reduction on type int variable with min switch and missing values........ SVn ok ncwa test 31: Dimension reduction on type int variable........................................... SVn ok ncwa test 32: Dimension reduction on type short variable with max switch and missing values...... SVn ok ncwa test 33: Dimension reduction on type short, max switch variable............................. SVn ok ncwa test 34: Weights at root group level........................................................ SVn ok ncwa test 35: weights would cause SIGFPE without dbl_prc patch................................... SVn ok ncwa test 36: avg would overflow without dbl_prc patch........................................... SVn ok ncwa test 37: test wrapped ttl with dbl_prc patch (harmless failure expected/OK on all chips s... SVn ok ncwa test 38: min with weights................................................................... SVn ok ncwa test 39: max with weights................................................................... SVn ok ncwa test 40: Return mean time coordinate (when computing totals)................................ SVn ok ncwa test 41: Return total record (when computing totals)........................................ SVn ok ncwa test 42: Retain degenerate dimensions (one variable)........................................ SVa ok ncwa test 43: Retain degenerate dimensions (all variables)....................................... SVa ok ncwa test 44: Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... SVa ok ncwa test 45: Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... SVa ok ncwa test 46: Cell methods (Create, maximum) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... SVa ok ncwa test 47: Mask condition with negative value................................................. SVa ok ncwa test 48: Minimization on packed single-precision float...................................... SVa ok ncwa test 49: Simple weights..................................................................... SVn ok ncrenam test 01: netCDF3: Valid values after renaming coordinate dimension in netCDF3 file.......... SVn ok ncrenam test 02: netCDF3: Valid values after renaming coordinate variable in netCDF3 file........... SVn ok ncrenam test 03: netCDF3: Valid values after renaming coordinate dimension and variable in netCDF... SVn ok ncrenam test 04: netCDF4-classic: Valid values after renaming coordinate dimension in netCDF4-cla... FAILED! ERR: FAILURE in ncrename failure: netCDF4-classic: Valid values after renaming coordinate dimension in netCDF4-classic file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 05: netCDF4-classic: Valid values after renaming coordinate variable in netCDF4-clas... FAILED! ERR: FAILURE in ncrename failure: netCDF4-classic: Valid values after renaming coordinate variable in netCDF4-classic file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 06: netCDF4-classic: Valid values after renaming coordinate dimension and variable i... FAILED! ERR: FAILURE in ncrename failure: netCDF4-classic: Valid values after renaming coordinate dimension and variable in netCDF4-classic file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 07: netCDF4: Valid values after renaming coordinate dimension in netCDF4 file.......... SVn ok ncrenam test 08: netCDF4: Valid values after renaming coordinate variable in netCDF4 file........... SVn ok ncrenam test 09: netCDF4: Valid values after renaming coordinate dimension and variable in netCDF... SVn ok Linux fbuild-nco 4.1.0-3-generic #3-Ubuntu SMP Tue Jul 28 12:25:10 UTC 2015 x86_64 GNU/Linux; ; Test Results Seconds to complete -------------------------- ---------------------------------------- Test Success Failure Total WallClock Real User System Diff ncap2: 11 11 1.29 0.00 0.00 0.00 0.00 ncatted: 5 5 0.45 0.00 0.00 0.00 0.00 ncbo: 15 15 1.75 0.00 0.00 0.00 0.00 ncflint: 5 5 0.67 0.00 0.00 0.00 0.00 nces: 10 1 11 0.67 0.00 0.00 0.00 0.00 ncecat: 4 4 0.62 0.00 0.00 0.00 0.00 ncks: 33 33 2.58 0.00 0.00 0.00 0.00 ncpdq: 35 35 1.72 0.00 0.00 0.00 0.00 ncra: 25 1 26 1.39 0.00 0.00 0.00 0.00 ncrcat: 23 23 2.51 10.00 0.00 0.00 10.00 ncrename: 6 3 9 0.85 0.00 0.00 0.00 0.00 ncwa: 49 49 2.67 0.00 0.00 0.00 0.00 NB:MD5: test passes MD5 checksum on file(s) May be more than one intermediate file. SVx: test passes single terminal value check SVn=numeric, SVa=alphabetic OK - data NOT sent, thanks for using NCO anyway - bye! make[2]: Leaving directory '/nco-4.5.1' make[1]: Leaving directory '/nco-4.5.1' debian/rules binary dh binary --with autoreconf \ --buildsystem autoconf \ --parallel dh_testroot -O--buildsystem=autoconf -O--parallel dh_prep -O--buildsystem=autoconf -O--parallel dh_installdirs -O--buildsystem=autoconf -O--parallel debian/rules override_dh_auto_install make[1]: Entering directory '/nco-4.5.1' dh_auto_install make -j1 install DESTDIR=/nco-4.5.1/debian/nco AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/nco-4.5.1' Making install in data make[3]: Entering directory '/nco-4.5.1/data' make[4]: Entering directory '/nco-4.5.1/data' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/nco-4.5.1/data' make[3]: Leaving directory '/nco-4.5.1/data' Making install in src make[3]: Entering directory '/nco-4.5.1/src' Making install in nco make[4]: Entering directory '/nco-4.5.1/src/nco' make[5]: Entering directory '/nco-4.5.1/src/nco' /bin/mkdir -p '/nco-4.5.1/debian/nco/usr/lib/nco' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/nco-4.5.1/debian/nco/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/libnco-4.5.1.so /nco-4.5.1/debian/nco/usr/lib/nco/libnco-4.5.1.so libtool: install: (cd /nco-4.5.1/debian/nco/usr/lib/nco && { ln -s -f libnco-4.5.1.so libnco.so || { rm -f libnco.so && ln -s libnco-4.5.1.so libnco.so; }; }) libtool: install: /usr/bin/install -c .libs/libnco.lai /nco-4.5.1/debian/nco/usr/lib/nco/libnco.la libtool: install: warning: remember to run `libtool --finish /usr/lib/nco' /bin/mkdir -p '/nco-4.5.1/debian/nco/usr/bin' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/nco-4.5.1/debian/nco/usr/bin' libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncap /nco-4.5.1/debian/nco/usr/bin/ncap libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncatted /nco-4.5.1/debian/nco/usr/bin/ncatted libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncbo /nco-4.5.1/debian/nco/usr/bin/ncbo libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncecat /nco-4.5.1/debian/nco/usr/bin/ncecat libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncflint /nco-4.5.1/debian/nco/usr/bin/ncflint libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncks /nco-4.5.1/debian/nco/usr/bin/ncks libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncpdq /nco-4.5.1/debian/nco/usr/bin/ncpdq libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncra /nco-4.5.1/debian/nco/usr/bin/ncra libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncrename /nco-4.5.1/debian/nco/usr/bin/ncrename libtool: install: warning: `libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncwa /nco-4.5.1/debian/nco/usr/bin/ncwa make install-exec-hook make[6]: Entering directory '/nco-4.5.1/src/nco' cd /nco-4.5.1/debian/nco/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /nco-4.5.1/debian/nco/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /nco-4.5.1/debian/nco/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /nco-4.5.1/debian/nco/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[6]: Leaving directory '/nco-4.5.1/src/nco' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/nco-4.5.1/src/nco' make[4]: Leaving directory '/nco-4.5.1/src/nco' Making install in nco++ make[4]: Entering directory '/nco-4.5.1/src/nco++' make[5]: Entering directory '/nco-4.5.1/src/nco++' /bin/mkdir -p '/nco-4.5.1/debian/nco/usr/bin' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/nco-4.5.1/debian/nco/usr/bin' libtool: install: warning: `/nco-4.5.1/src/nco/libnco.la' has not been installed in `/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncap2 /nco-4.5.1/debian/nco/usr/bin/ncap2 make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/nco-4.5.1/src/nco++' make[4]: Leaving directory '/nco-4.5.1/src/nco++' make[4]: Entering directory '/nco-4.5.1/src' make[5]: Entering directory '/nco-4.5.1/src' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/nco-4.5.1/src' make[4]: Leaving directory '/nco-4.5.1/src' make[3]: Leaving directory '/nco-4.5.1/src' Making install in man make[3]: Entering directory '/nco-4.5.1/man' make[4]: Entering directory '/nco-4.5.1/man' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/nco-4.5.1/debian/nco/usr/share/man/man1' /usr/bin/install -c -m 644 ncap.1 ncap2.1 ncatted.1 ncbo.1 ncdiff.1 ncea.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/nco-4.5.1/debian/nco/usr/share/man/man1' make[4]: Leaving directory '/nco-4.5.1/man' make[3]: Leaving directory '/nco-4.5.1/man' Making install in doc make[3]: Entering directory '/nco-4.5.1/doc' make[4]: Entering directory '/nco-4.5.1/doc' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/nco-4.5.1/debian/nco/usr/share/info' /usr/bin/install -c -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 '/nco-4.5.1/debian/nco/usr/share/info' make[4]: Leaving directory '/nco-4.5.1/doc' make[3]: Leaving directory '/nco-4.5.1/doc' make[3]: Entering directory '/nco-4.5.1' make[4]: Entering directory '/nco-4.5.1' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/nco-4.5.1' make[3]: Leaving directory '/nco-4.5.1' make[2]: Leaving directory '/nco-4.5.1' find /nco-4.5.1/debian/nco -name '*.h' -delete find /nco-4.5.1/debian/nco -name '*.hh' -delete rm -f debian/nco/usr/lib/nco/libnco.la rm -f debian/nco/usr/share/info/dir make[1]: Leaving directory '/nco-4.5.1' debian/rules override_dh_install make[1]: Entering directory '/nco-4.5.1' dh_install --list-missing make[1]: Leaving directory '/nco-4.5.1' dh_installdocs -O--buildsystem=autoconf -O--parallel dh_installchangelogs -O--buildsystem=autoconf -O--parallel dh_installexamples -O--buildsystem=autoconf -O--parallel dh_installman -O--buildsystem=autoconf -O--parallel dh_installcatalogs -O--buildsystem=autoconf -O--parallel dh_installcron -O--buildsystem=autoconf -O--parallel dh_installdebconf -O--buildsystem=autoconf -O--parallel dh_installemacsen -O--buildsystem=autoconf -O--parallel dh_installifupdown -O--buildsystem=autoconf -O--parallel dh_installinfo -O--buildsystem=autoconf -O--parallel dh_installinit -O--buildsystem=autoconf -O--parallel dh_installmenu -O--buildsystem=autoconf -O--parallel dh_installmime -O--buildsystem=autoconf -O--parallel dh_installmodules -O--buildsystem=autoconf -O--parallel dh_installlogcheck -O--buildsystem=autoconf -O--parallel dh_installlogrotate -O--buildsystem=autoconf -O--parallel dh_installpam -O--buildsystem=autoconf -O--parallel dh_installppp -O--buildsystem=autoconf -O--parallel dh_installudev -O--buildsystem=autoconf -O--parallel dh_installgsettings -O--buildsystem=autoconf -O--parallel dh_bugfiles -O--buildsystem=autoconf -O--parallel dh_ucf -O--buildsystem=autoconf -O--parallel dh_lintian -O--buildsystem=autoconf -O--parallel dh_gconf -O--buildsystem=autoconf -O--parallel dh_icons -O--buildsystem=autoconf -O--parallel dh_perl -O--buildsystem=autoconf -O--parallel dh_usrlocal -O--buildsystem=autoconf -O--parallel dh_link -O--buildsystem=autoconf -O--parallel dh_installwm -O--buildsystem=autoconf -O--parallel dh_installxfonts -O--buildsystem=autoconf -O--parallel dh_compress -O--buildsystem=autoconf -O--parallel dh_fixperms -O--buildsystem=autoconf -O--parallel dh_strip -O--buildsystem=autoconf -O--parallel debian/rules override_dh_makeshlibs make[1]: Entering directory '/nco-4.5.1' dh_makeshlibs -Xusr/lib/nco make[1]: Leaving directory '/nco-4.5.1' dh_shlibdeps -O--buildsystem=autoconf -O--parallel dpkg-shlibdeps: warning: debian/nco/usr/lib/nco/libnco-4.5.1.so contains an unresolvable reference to symbol nco_fmt_xtn_set: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncecat debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncra debian/nco/usr/bin/ncap debian/nco/usr/bin/ncpdq debian/nco/usr/lib/nco/libnco-4.5.1.so debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 were not linked against libhdf5_serial_hl.so.8 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncecat debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncra debian/nco/usr/bin/ncap debian/nco/usr/bin/ncpdq debian/nco/usr/lib/nco/libnco-4.5.1.so debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 were not linked against libcurl-gnutls.so.4 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncecat debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncra debian/nco/usr/bin/ncap debian/nco/usr/bin/ncpdq debian/nco/usr/lib/nco/libnco-4.5.1.so debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 were not linked against libhdf5_serial.so.8 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncecat debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncra debian/nco/usr/bin/ncap debian/nco/usr/bin/ncpdq debian/nco/usr/lib/nco/libnco-4.5.1.so debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 were not linked against libdl.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncecat debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncra debian/nco/usr/bin/ncap debian/nco/usr/bin/ncpdq debian/nco/usr/lib/nco/libnco-4.5.1.so debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 were not linked against libgslcblas.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncecat debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncra debian/nco/usr/bin/ncap debian/nco/usr/bin/ncpdq debian/nco/usr/lib/nco/libnco-4.5.1.so debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 were not linked against libz.so.1 (they use none of the library's symbols) dh_installdeb -O--buildsystem=autoconf -O--parallel dh_gencontrol -O--buildsystem=autoconf -O--parallel dh_md5sums -O--buildsystem=autoconf -O--parallel dh_builddeb -O--buildsystem=autoconf -O--parallel dpkg-deb: building package 'nco' in '../nco_4.5.1-2_amd64.deb'. dpkg-genchanges >../nco_4.5.1-2_amd64.changes dpkg-genchanges: not including original source code in upload dpkg-source --after-build nco-4.5.1 dpkg-buildpackage: binary and diff upload (original source NOT included)