Reading package lists... Building dependency tree... Reading state information... NOTICE: 'mapsembler2' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/mapsembler2/trunk/ Need to get 1,771 kB of source archives. Get:1 http://urika:3142/ftp.debian.org/debian/ sid/main mapsembler2 2.2.3+dfsg-2 (dsc) [2,286 B] Get:2 http://urika:3142/ftp.debian.org/debian/ sid/main mapsembler2 2.2.3+dfsg-2 (tar) [1,761 kB] Get:3 http://urika:3142/ftp.debian.org/debian/ sid/main mapsembler2 2.2.3+dfsg-2 (diff) [8,384 B] gpgv: keyblock resource `/tmp/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Sun 22 Mar 2015 10:31:44 AM UTC using RSA key ID 326D8438 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mapsembler2_2.2.3+dfsg-2.dsc dpkg-source: info: extracting mapsembler2 in mapsembler2-2.2.3+dfsg dpkg-source: info: unpacking mapsembler2_2.2.3+dfsg.orig.tar.gz dpkg-source: info: unpacking mapsembler2_2.2.3+dfsg-2.debian.tar.xz dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe Fetched 1,771 kB in 0s (3,719 kB/s) Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: bc bsdmainutils cmake cmake-data debhelper file gettext gettext-base groff-base hdf5-helpers help2man intltool-debian libarchive13 libasprintf0v5 libboost-dev libboost1.58-dev libcppunit-1.13-0v5 libcppunit-dev libcroco3 libcurl3 libexpat1 libffi6 libgfortran3 libglib2.0-0 libgnutls-deb0-28 libhdf5-8 libhdf5-cpp-8 libhdf5-dev libhogweed4 libicu52 libidn11 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp0v5 libldap-2.4-2 liblzo2-2 libmagic1 libnettle6 libp11-kit0 libpipeline1 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libtasn1-6 libunistring0 libxml2 man-db po-debconf zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 36.7 MB of archives. After this operation, 230 MB of additional disk space will be used. Get:1 http://urika:3142/ftp.debian.org/debian/ sid/main libasprintf0v5 amd64 0.19.5.1-1 [32.2 kB] Get:2 http://urika:3142/ftp.debian.org/debian/ sid/main libnettle6 amd64 3.1.1-4 [189 kB] Get:3 http://urika:3142/ftp.debian.org/debian/ sid/main libhogweed4 amd64 3.1.1-4 [136 kB] Get:4 http://urika:3142/ftp.debian.org/debian/ sid/main libffi6 amd64 3.2.1-3 [20.1 kB] Get:5 http://urika:3142/ftp.debian.org/debian/ sid/main libp11-kit0 amd64 0.23.1-3 [112 kB] Get:6 http://urika:3142/ftp.debian.org/debian/ sid/main libtasn1-6 amd64 4.5-2 [49.6 kB] Get:7 http://urika:3142/ftp.debian.org/debian/ sid/main libgnutls-deb0-28 amd64 3.3.17-1 [716 kB] Get:8 http://urika:3142/ftp.debian.org/debian/ sid/main libsasl2-modules-db amd64 2.1.26.dfsg1-13 [67.0 kB] Get:9 http://urika:3142/ftp.debian.org/debian/ sid/main libsasl2-2 amd64 2.1.26.dfsg1-13 [104 kB] Get:10 http://urika:3142/ftp.debian.org/debian/ sid/main libldap-2.4-2 amd64 2.4.41+dfsg-1 [222 kB] Get:11 http://urika:3142/ftp.debian.org/debian/ sid/main libmagic1 amd64 1:5.22+15-2 [249 kB] Get:12 http://urika:3142/ftp.debian.org/debian/ sid/main libicu52 amd64 52.1-10 [6,786 kB] Get:13 http://urika:3142/ftp.debian.org/debian/ sid/main libxml2 amd64 2.9.2+dfsg1-3 [934 kB] Get:14 http://urika:3142/ftp.debian.org/debian/ sid/main groff-base amd64 1.22.3-1 [1,205 kB] Get:15 http://urika:3142/ftp.debian.org/debian/ sid/main bsdmainutils amd64 9.0.6 [183 kB] Get:16 http://urika:3142/ftp.debian.org/debian/ sid/main libpipeline1 amd64 1.4.1-1 [27.8 kB] Get:17 http://urika:3142/ftp.debian.org/debian/ sid/main man-db amd64 2.7.2-1 [1,000 kB] Get:18 http://urika:3142/ftp.debian.org/debian/ sid/main cmake-data all 3.2.2-2 [1,046 kB] Get:19 http://urika:3142/ftp.debian.org/debian/ sid/main liblzo2-2 amd64 2.08-1.2 [54.6 kB] Get:20 http://urika:3142/ftp.debian.org/debian/ sid/main libarchive13 amd64 3.1.2-11+b1 [269 kB] Get:21 http://urika:3142/ftp.debian.org/debian/ sid/main libidn11 amd64 1.32-1 [171 kB] Get:22 http://urika:3142/ftp.debian.org/debian/ sid/main librtmp1 amd64 2.4+20150115.gita107cef-1+b2 [60.1 kB] Get:23 http://urika:3142/ftp.debian.org/debian/ sid/main libssh2-1 amd64 1.5.0-2+b1 [133 kB] Get:24 http://urika:3142/ftp.debian.org/debian/ sid/main libcurl3 amd64 7.44.0-1 [267 kB] Get:25 http://urika:3142/ftp.debian.org/debian/ sid/main libexpat1 amd64 2.1.0-7 [80.0 kB] Get:26 http://urika:3142/ftp.debian.org/debian/ sid/main libjsoncpp0v5 amd64 0.10.5-1 [75.7 kB] Get:27 http://urika:3142/ftp.debian.org/debian/ sid/main cmake amd64 3.2.2-2+b1 [2,538 kB] Get:28 http://urika:3142/ftp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.44.1-1.1 [2,461 kB] Get:29 http://urika:3142/ftp.debian.org/debian/ sid/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:30 http://urika:3142/ftp.debian.org/debian/ sid/main libgfortran3 amd64 5.2.1-15 [253 kB] Get:31 http://urika:3142/ftp.debian.org/debian/ sid/main libunistring0 amd64 0.9.3-5.2+b1 [288 kB] Get:32 http://urika:3142/ftp.debian.org/debian/ sid/main file amd64 1:5.22+15-2 [60.1 kB] Get:33 http://urika:3142/ftp.debian.org/debian/ sid/main gettext-base amd64 0.19.5.1-1 [122 kB] Get:34 http://urika:3142/ftp.debian.org/debian/ sid/main bc amd64 1.06.95-9 [103 kB] Get:35 http://urika:3142/ftp.debian.org/debian/ sid/main gettext amd64 0.19.5.1-1 [1,459 kB] Get:36 http://urika:3142/ftp.debian.org/debian/ sid/main intltool-debian all 0.35.0+20060710.2 [25.9 kB] Get:37 http://urika:3142/ftp.debian.org/debian/ sid/main po-debconf all 1.0.18 [248 kB] Get:38 http://urika:3142/ftp.debian.org/debian/ sid/main debhelper all 9.20150811 [817 kB] Get:39 http://urika:3142/ftp.debian.org/debian/ sid/main hdf5-helpers amd64 1.8.13+docs-15.1 [36.5 kB] Get:40 http://urika:3142/ftp.debian.org/debian/ sid/main help2man amd64 1.47.1 [150 kB] Get:41 http://urika:3142/ftp.debian.org/debian/ sid/main libboost1.58-dev amd64 1.58.0+dfsg-3 [6,251 kB] Get:42 http://urika:3142/ftp.debian.org/debian/ sid/main libboost-dev amd64 1.58.0.1 [3,458 B] Get:43 http://urika:3142/ftp.debian.org/debian/ sid/main libcppunit-1.13-0v5 amd64 1.13.2-2.1 [112 kB] Get:44 http://urika:3142/ftp.debian.org/debian/ sid/main libcppunit-dev amd64 1.13.2-2.1 [171 kB] Get:45 http://urika:3142/ftp.debian.org/debian/ sid/main libhdf5-8 amd64 1.8.13+docs-15.1 [1,060 kB] Get:46 http://urika:3142/ftp.debian.org/debian/ sid/main libhdf5-cpp-8 amd64 1.8.13+docs-15.1 [118 kB] Get:47 http://urika:3142/ftp.debian.org/debian/ sid/main zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:48 http://urika:3142/ftp.debian.org/debian/ sid/main libjpeg62-turbo amd64 1:1.4.1-1 [125 kB] Get:49 http://urika:3142/ftp.debian.org/debian/ sid/main libjpeg62-turbo-dev amd64 1:1.4.1-1 [476 kB] Get:50 http://urika:3142/ftp.debian.org/debian/ sid/main libjpeg-dev all 1:1.4.1-1 [51.8 kB] Get:51 http://urika:3142/ftp.debian.org/debian/ sid/main libhdf5-dev amd64 1.8.13+docs-15.1 [5,281 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.7 MB in 0s (53.9 MB/s) Selecting previously unselected package libasprintf0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15408 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.5.1-1_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.5.1-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.1.1-4_amd64.deb ... Unpacking libnettle6:amd64 (3.1.1-4) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../libhogweed4_3.1.1-4_amd64.deb ... Unpacking libhogweed4:amd64 (3.1.1-4) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.2.1-3_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-3) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.23.1-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.1-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.5-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.5-2) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.17-1_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.17-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-13_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-13) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-13_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-13) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.41+dfsg-1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.41+dfsg-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2) ... Selecting previously unselected package libicu52:amd64. Preparing to unpack .../libicu52_52.1-10_amd64.deb ... Unpacking libicu52:amd64 (52.1-10) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.2+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.2+dfsg1-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-1_amd64.deb ... Unpacking groff-base (1.22.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6_amd64.deb ... Unpacking bsdmainutils (9.0.6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.2-1_amd64.deb ... Unpacking man-db (2.7.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../cmake-data_3.2.2-2_all.deb ... Unpacking cmake-data (3.2.2-2) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../liblzo2-2_2.08-1.2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.08-1.2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../libarchive13_3.1.2-11+b1_amd64.deb ... Unpacking libarchive13:amd64 (3.1.2-11+b1) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.32-1_amd64.deb ... Unpacking libidn11:amd64 (1.32-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../librtmp1_2.4+20150115.gita107cef-1+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20150115.gita107cef-1+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.5.0-2+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.5.0-2+b1) ... Selecting previously unselected package libcurl3:amd64. Preparing to unpack .../libcurl3_7.44.0-1_amd64.deb ... Unpacking libcurl3:amd64 (7.44.0-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-7_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-7) ... Selecting previously unselected package libjsoncpp0v5:amd64. Preparing to unpack .../libjsoncpp0v5_0.10.5-1_amd64.deb ... Unpacking libjsoncpp0v5:amd64 (0.10.5-1) ... Selecting previously unselected package cmake. Preparing to unpack .../cmake_3.2.2-2+b1_amd64.deb ... Unpacking cmake (3.2.2-2+b1) ... 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Unpacking help2man (1.47.1) ... Selecting previously unselected package libboost1.58-dev:amd64. Preparing to unpack .../libboost1.58-dev_1.58.0+dfsg-3_amd64.deb ... Unpacking libboost1.58-dev:amd64 (1.58.0+dfsg-3) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../libboost-dev_1.58.0.1_amd64.deb ... Unpacking libboost-dev:amd64 (1.58.0.1) ... Selecting previously unselected package libcppunit-1.13-0v5:amd64. Preparing to unpack .../libcppunit-1.13-0v5_1.13.2-2.1_amd64.deb ... Unpacking libcppunit-1.13-0v5:amd64 (1.13.2-2.1) ... Selecting previously unselected package libcppunit-dev. Preparing to unpack .../libcppunit-dev_1.13.2-2.1_amd64.deb ... Unpacking libcppunit-dev (1.13.2-2.1) ... Selecting previously unselected package libhdf5-8:amd64. Preparing to unpack .../libhdf5-8_1.8.13+docs-15.1_amd64.deb ... Unpacking libhdf5-8:amd64 (1.8.13+docs-15.1) ... Selecting previously unselected package libhdf5-cpp-8:amd64. Preparing to unpack .../libhdf5-cpp-8_1.8.13+docs-15.1_amd64.deb ... Unpacking libhdf5-cpp-8:amd64 (1.8.13+docs-15.1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.4.1-1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.4.1-1) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.4.1-1_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.4.1-1) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../libjpeg-dev_1%3a1.4.1-1_all.deb ... Unpacking libjpeg-dev (1:1.4.1-1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../libhdf5-dev_1.8.13+docs-15.1_amd64.deb ... Unpacking libhdf5-dev (1.8.13+docs-15.1) ... Setting up libasprintf0v5:amd64 (0.19.5.1-1) ... Setting up libnettle6:amd64 (3.1.1-4) ... Setting up libhogweed4:amd64 (3.1.1-4) ... Setting up libffi6:amd64 (3.2.1-3) ... Setting up libp11-kit0:amd64 (0.23.1-3) ... Setting up libtasn1-6:amd64 (4.5-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.17-1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13) ... Setting up libldap-2.4-2:amd64 (2.4.41+dfsg-1) ... Setting up libmagic1:amd64 (1:5.22+15-2) ... Setting up libicu52:amd64 (52.1-10) ... Setting up libxml2:amd64 (2.9.2+dfsg1-3) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.2-1) ... Building database of manual pages ... Setting up cmake-data (3.2.2-2) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up libarchive13:amd64 (3.1.2-11+b1) ... Setting up libidn11:amd64 (1.32-1) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+b2) ... Setting up libssh2-1:amd64 (1.5.0-2+b1) ... Setting up libcurl3:amd64 (7.44.0-1) ... Setting up libexpat1:amd64 (2.1.0-7) ... Setting up libjsoncpp0v5:amd64 (0.10.5-1) ... Setting up cmake (3.2.2-2+b1) ... Setting up libglib2.0-0:amd64 (2.44.1-1.1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-3+b1) ... Setting up libgfortran3:amd64 (5.2.1-15) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up file (1:5.22+15-2) ... Setting up gettext-base (0.19.5.1-1) ... Setting up bc (1.06.95-9) ... Setting up gettext (0.19.5.1-1) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20150811) ... Setting up hdf5-helpers (1.8.13+docs-15.1) ... Setting up help2man (1.47.1) ... Setting up libboost1.58-dev:amd64 (1.58.0+dfsg-3) ... Setting up libboost-dev:amd64 (1.58.0.1) ... Setting up libcppunit-1.13-0v5:amd64 (1.13.2-2.1) ... Setting up libcppunit-dev (1.13.2-2.1) ... Setting up libhdf5-8:amd64 (1.8.13+docs-15.1) ... Setting up libhdf5-cpp-8:amd64 (1.8.13+docs-15.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libjpeg62-turbo:amd64 (1:1.4.1-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.4.1-1) ... Setting up libjpeg-dev (1:1.4.1-1) ... Setting up libhdf5-dev (1.8.13+docs-15.1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.19-19) ... Killed old client process Internet Systems Consortium DHCP Client 4.3.2 Copyright 2004-2015 Internet Systems Consortium. All rights reserved. For info, please visit https://www.isc.org/software/dhcp/ Listening on LPF/eth0/a2:af:ba:27:ee:73 Sending on LPF/eth0/a2:af:ba:27:ee:73 Sending on Socket/fallback DHCPRELEASE on eth0 to 10.0.3.1 port 67 dpkg-buildpackage: source package mapsembler2 dpkg-buildpackage: source version 2.2.3+dfsg-2 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build mapsembler2-2.2.3+dfsg dpkg-buildpackage: host architecture amd64 debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/mapsembler2-2.2.3+dfsg' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/mapsembler2-2.2.3+dfsg/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/mapsembler2-2.2.3+dfsg/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/mapsembler2-2.2.3+dfsg/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/mapsembler2-2.2.3+dfsg/kissreads' rm -f kissreads/mapsembler2_kissreads rm -f mapsembler2_extremities.1 rm -f mapsembler_extend.1 rm -f kissreads.1 rm -f kissreads_graph.1 dh_clean make[1]: Leaving directory '/mapsembler2-2.2.3+dfsg' dpkg-source -b mapsembler2-2.2.3+dfsg dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building mapsembler2 using existing ./mapsembler2_2.2.3+dfsg.orig.tar.gz dpkg-source: info: building mapsembler2 in mapsembler2_2.2.3+dfsg-2.debian.tar.xz dpkg-source: info: building mapsembler2 in mapsembler2_2.2.3+dfsg-2.dsc debian/rules build dh build dh_testdir dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/mapsembler2-2.2.3+dfsg' mkdir mapsembler2_extremities/build cd mapsembler2_extremities/build && cmake .. && make -- The C compiler identification is GNU 5.2.1 -- The CXX compiler identification is GNU 5.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Failed -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Failed -- gatb-core is here '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core' -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.20.2") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:201 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build make[2]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[3]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 2%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o [ 4%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o [ 9%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o [ 9%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23:0: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ [ 11%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o [ 16%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o [ 18%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:52: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t {aka long int}’ [-Wformat=] snprintf (buffer, sizeof(buffer), "%lld", value); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:52: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t {aka long int}’ [-Wformat=] [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o [ 23%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o [ 23%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:296:9: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o [ 30%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o [ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:47: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^ [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:47: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^ [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function ‘gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:80: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); ^ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128ul>::Count]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:200:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96ul>::Count]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:200:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64ul>::Count]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:200:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32ul>::Count]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:200:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128ul>::Count; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96ul>::Count; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64ul>::Count; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32ul>::Count; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:35: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:35: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30:0: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o [ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128ul>::Count]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128ul>::Count; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ [ 62%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:15:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:15:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:15:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32ul>::Count]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:15:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32ul>::Count; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ [ 62%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96ul>::Count]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96ul>::Count; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ [ 69%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64ul>::Count]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:10:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64ul>::Count; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:214:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ [ 74%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:794:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:794:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:794:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:794:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:794:7: required from here /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ^ /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>; std::__cxx11::string = std::__cxx11::basic_string]’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’, declared with attribute warn_unused_result [-Wunused-result] [ 76%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o [ 76%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o [ 81%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o [ 83%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o [ 86%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o [ 88%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o In file included from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32:0, from /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:47: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ^ [ 90%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o Linking CXX static library ../lib/libgatbcore.a make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 90%] Built target gatbcore-static make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target mapsembler2_extremities make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 93%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o [ 95%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o Linking CXX executable mapsembler2_extremities make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 95%] Built target mapsembler2_extremities make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbgh5 make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 97%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o Linking CXX executable ../bin/dbgh5 make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [ 97%] Built target dbgh5 make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbginfo make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [100%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o Linking CXX executable ../bin/dbginfo make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [100%] Built target dbginfo make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' Scanning dependencies of target emphf_copyasis make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[4]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' [100%] Built target emphf_copyasis make[3]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' make[2]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build' cd mapsembler2_extend && make k=29 make[2]: Entering directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function ‘void Bank::init(char**, int)’: ../minia/Bank.cpp:282:44: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^ ../minia/Bank.cpp: In member function ‘void BinaryBank::open(bool)’: ../minia/Bank.cpp:713:44: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^ ../minia/Bank.cpp: In member function ‘void BinaryReads::open(bool)’: ../minia/Bank.cpp:798:44: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ^ ../minia/Bank.cpp: In member function ‘int KmersBuffer::readkmers()’: ../minia/Bank.cpp:988:65: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer ^ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bloom.cpp: In member function ‘void Bloom::load(char*)’: ../minia/Bloom.cpp:256:62: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("loading bloom filter from file, nelem %lli \n",nchar); ^ ../minia/Bloom.cpp:257:56: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(blooma, sizeof(unsigned char), nchar, file_data); ^ g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)’: ../minia/Terminator.cpp:275:182: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); ^ ../minia/Terminator.cpp:303:150: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t {aka long int}’ [-Wformat=] if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); ^ ../minia/Terminator.cpp:303:150: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)’: ../minia/Terminator.cpp:337:186: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t {aka long int}’ [-Wformat=] fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); ^ g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Set.cpp: In member function ‘void AssocPairedSet::load(char*)’: ../minia/Set.cpp:290:82: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); ^ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function ‘uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)’: ../minia/Utils.cpp:434:112: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t {aka long int}’ [-Wformat=] if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); ^ ../minia/Utils.cpp: In instantiation of ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:167:85: required from here ../minia/Utils.cpp:121:15: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); ^ ../minia/Utils.cpp:121:15: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:187:42: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_kmercpt_write), 0); //erase previous file ^ ../minia/Utils.cpp:199:54: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); ^ ../minia/Utils.cpp:225:45: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_kmercpt_read), 0); //erase previous file ^ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp: In function ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’: ../minia/SortingCount.cpp:56:50: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd(current_path,sizeof(current_path)); ^ ../minia/SortingCount.cpp:283:52: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ^ ../minia/SortingCount.cpp:537:56: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ^ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function ‘int debloom(int, int)’: ../minia/Debloom.cpp:154:106: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); ^ ../minia/Debloom.cpp:158:47: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] fprintf(stderr,"\n%lli kmers written\n",cc); ^ ../minia/Debloom.cpp:191:93: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); ^ ../minia/Debloom.cpp:195:104: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); ^ ../minia/Debloom.cpp:195:104: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] ../minia/Debloom.cpp:208:104: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); ^ ../minia/Debloom.cpp:225:104: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); ^ ../minia/Debloom.cpp: In function ‘Set* load_false_positives()’: ../minia/Debloom.cpp:280:133: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t {aka long int}’ [-Wformat=] if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); ^ ../minia/Debloom.cpp:284:102: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t {aka long int}’ [-Wformat=] fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); ^ ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSet*)’: ../minia/Debloom.cpp:445:144: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); ^ ../minia/Debloom.cpp:448:156: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); ^ ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSetCascading4*)’: ../minia/Debloom.cpp:465:156: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); ^ ../minia/Debloom.cpp: In function ‘void end_debloom_partition(bool)’: ../minia/Debloom.cpp:29:39: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_debloom_write), 0); //erase previous file ^ g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o commons.o -c commons.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial mapsembler_extend.cpp: In function ‘int main(int, char**)’: mapsembler_extend.cpp:145:67: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘int64_t {aka long int}’ [-Wformat=] printf(" Will use genome_size=%llu\n", genome_size); //TODO format ^ mapsembler_extend.cpp:320:101: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] command = string("rm -f ")+prefix_trashable.c_str()+string("*"); system((char *)command.c_str()); ^ /tmp/ccbJDlWr.o: In function `main': /mapsembler2-2.2.3+dfsg/mapsembler2_extend/mapsembler_extend.cpp:320: undefined reference to `prefix_trashable[abi:cxx11]' collect2: error: ld returned 1 exit status makefile:113: recipe for target 'mapsembler_extend' failed make[2]: *** [mapsembler_extend] Error 1 make[2]: Leaving directory '/mapsembler2-2.2.3+dfsg/mapsembler2_extend' debian/rules:27: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/mapsembler2-2.2.3+dfsg' debian/rules:21: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2